MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:30.7 nTPM
GTEx:43.7 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:59.1 nTPM
Mouse:14.6 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2828 Female, age 72, unknown 35.2
2586 Male, age 75, left hemisphere 28.4
2666 Male, age 74, left hemisphere 26.6
2411 Female, age 72, unknown 22.7
1830 Male, age 51, unknown 22.4
2019 Male, age 18, unknown 21.4
1833 Male, age 53, unknown 20.5
1870 Female, age 42, unknown 19.8
1827 Male, age 72, unknown 18.3
2219 Male, age 76, both hemispheres 16.5
Dorsal raphe nucleus
nTPM: 30.6
2016 Female, age 72, unknown 39.9
2298 Female, age 72, unknown 37.1
1828 Male, age 53, unknown 29.1
2047 Male, age 72, unknown 26.4
2750 Male, age 76, both hemispheres 20.6
Inferior colliculus
nTPM: 24.2
1890 Male, age 53, unknown 27.3
2097 Female, age 72, unknown 24.9
1848 Female, age 42, unknown 23.0
2849 Male, age 72, unknown 21.5
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Periaquaductal grey, anterior
nTPM: 25.5
1795 Male, age 51, unknown 30.8
2502 Female, age 75, unknown 23.4
1947 Male, age 18, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 30.6
2850 Male, age 76, both hemispheres 37.2
1831 Male, age 72, unknown 36.3
1840 Male, age 53, unknown 25.4
2464 Female, age 72, unknown 23.6
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 31.4
2053 Male, age 18, unknown 31.3
2272 Male, age 74, both hemispheres 27.2
Pretectal area
nTPM: 23.2
2273 Male, age 74, both hemispheres 30.0
2316 Male, age 76, right hemisphere 28.9
2407 Male, age 75, both hemispheres 24.5
2667 Female, age 75, unknown 24.3
1817 Female, age 42, unknown 24.0
1815 Male, age 53, unknown 23.9
2224 Female, age 72, unknown 22.8
2825 Male, age 18, unknown 22.2
2007 Male, age 72, unknown 18.7
1944 Female, age 72, unknown 17.8
1816 Male, age 51, unknown 17.7
Red nucleus
nTPM: 26.7
1865 Male, age 51, unknown 30.8
1904 Male, age 53, unknown 30.7
2227 Male, age 72, unknown 29.3
2725 Female, age 75, unknown 28.6
2503 Female, age 72, unknown 28.5
2769 Male, age 72, unknown 28.5
1954 Female, age 42, unknown 28.3
1821 Female, age 72, unknown 26.8
2823 Male, age 76, right hemisphere 25.8
2584 Male, age 75, left hemisphere 23.6
2785 Male, age 18, unknown 21.8
2588 Male, age 74, left hemisphere 18.1
Substantia nigra
nTPM: 30.7
2699 Male, age 18, unknown 47.1
2665 Male, age 74, both hemispheres 33.7
1851 Male, age 51, unknown 33.1
2590 Female, age 75, unknown 32.7
2583 Male, age 75, right hemisphere 31.9
1916 Female, age 42, unknown 31.4
2409 Female, age 72, unknown 27.9
2241 Male, age 72, unknown 24.8
1941 Male, age 53, unknown 23.5
1889 Female, age 72, unknown 20.8
Superior colliculus
nTPM: 26.5
1995 Male, age 72, unknown 40.8
1913 Female, age 42, unknown 37.9
2587 Male, age 74, left hemisphere 26.6
2664 Male, age 75, both hemispheres 26.2
1796 Male, age 53, unknown 25.2
2261 Male, age 18, unknown 23.2
2087 Female, age 72, unknown 22.8
2668 Female, age 75, unknown 22.2
1839 Male, age 51, unknown 21.4
1895 Male, age 76, right hemisphere 18.2
Ventral tegmental area
nTPM: 28.5
2021 Male, age 53, unknown 35.6
1915 Female, age 42, unknown 32.9
1942 Male, age 51, unknown 28.0
2410 Female, age 72, unknown 27.7
2223 Female, age 72, unknown 24.7
2218 Male, age 76, both hemispheres 22.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 183

Max nTPM: 115.7
Min nTPM: 7.0
Std nTPM: 17.7
Median nTPM: 39.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 115.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 113.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 98.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 89.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 88.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 86.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 79.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 78.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 77.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 76.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 75.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.7
FF:10158-103A5 76 years, female 50.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.6
Samples: 4

Max nTPM: 66.7
Min nTPM: 43.1
Sample A Female 56.7
Sample B Female 66.7
Sample C Male 51.9
Sample D Male 43.1
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 54.4
Min nTPM: 38.5
Sample A Female 54.4
Sample B Female 42.2
Sample C Male 39.7
Sample D Male 38.5
Periaqueductal gray
nTPM: 44.8
Samples: 3

Max nTPM: 53.9
Min nTPM: 39.8
Sample B Female 39.8
Sample C Male 53.9
Sample D Male 40.7
Superior colliculi
nTPM: 59.1
Samples: 4

Max nTPM: 83.6
Min nTPM: 41.6
Sample A Female 66.2
Sample B Female 83.6
Sample C Male 41.6
Sample D Male 44.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 19.0
Min nTPM: 10.9
Sample A Male 19.0
Sample B Male 10.9
Sample C Female 14.3
Sample D Female 14.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
79544790 Antisense, RP_071018_01_C04, Mouse strain C57BL/6J (56 days, male) 0.4

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