MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.2 nTPM
HPA Brain:32.2 nTPM
GTEx:10.2 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:14.2 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.0
2586 Male, age 75, left hemisphere 40.2
2828 Female, age 72, unknown 30.1
1833 Male, age 53, unknown 29.7
2666 Male, age 74, left hemisphere 29.6
1870 Female, age 42, unknown 29.2
1830 Male, age 51, unknown 28.6
2019 Male, age 18, unknown 28.2
2411 Female, age 72, unknown 26.4
1827 Male, age 72, unknown 25.7
2219 Male, age 76, both hemispheres 22.2
Dorsal raphe nucleus
nTPM: 23.0
2750 Male, age 76, both hemispheres 25.8
2016 Female, age 72, unknown 23.8
1828 Male, age 53, unknown 23.3
2298 Female, age 72, unknown 22.0
2047 Male, age 72, unknown 19.9
Inferior colliculus
nTPM: 24.5
1848 Female, age 42, unknown 26.1
2849 Male, age 72, unknown 25.1
1890 Male, age 53, unknown 23.4
2097 Female, age 72, unknown 23.1
Median raphe nucleus
nTPM: 18.4
2220 Male, age 76, midline 18.4
Periaquaductal grey, anterior
nTPM: 27.3
2502 Female, age 75, unknown 30.7
1947 Male, age 18, unknown 25.8
1795 Male, age 51, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 21.1
2464 Female, age 72, unknown 25.1
1831 Male, age 72, unknown 21.3
1840 Male, age 53, unknown 20.9
2850 Male, age 76, both hemispheres 17.2
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 23.7
2272 Male, age 74, both hemispheres 21.9
2140 Male, age 76, both hemispheres 19.5
Pretectal area
nTPM: 25.0
2407 Male, age 75, both hemispheres 29.8
2007 Male, age 72, unknown 27.4
1815 Male, age 53, unknown 26.8
1817 Female, age 42, unknown 26.3
2667 Female, age 75, unknown 26.2
2316 Male, age 76, right hemisphere 24.8
2825 Male, age 18, unknown 24.5
1944 Female, age 72, unknown 23.6
1816 Male, age 51, unknown 23.1
2273 Male, age 74, both hemispheres 21.5
2224 Female, age 72, unknown 21.4
Red nucleus
nTPM: 32.2
2769 Male, age 72, unknown 35.9
2227 Male, age 72, unknown 35.7
1904 Male, age 53, unknown 35.6
2584 Male, age 75, left hemisphere 33.8
2588 Male, age 74, left hemisphere 33.6
1865 Male, age 51, unknown 32.9
2785 Male, age 18, unknown 32.5
2823 Male, age 76, right hemisphere 31.9
1954 Female, age 42, unknown 30.9
2503 Female, age 72, unknown 30.3
1821 Female, age 72, unknown 28.6
2725 Female, age 75, unknown 24.6
Substantia nigra
nTPM: 23.4
2583 Male, age 75, right hemisphere 29.8
2590 Female, age 75, unknown 25.3
2665 Male, age 74, both hemispheres 25.2
1851 Male, age 51, unknown 25.1
1889 Female, age 72, unknown 24.2
2699 Male, age 18, unknown 24.0
2409 Female, age 72, unknown 21.5
1916 Female, age 42, unknown 20.3
1941 Male, age 53, unknown 19.9
2241 Male, age 72, unknown 18.5
Superior colliculus
nTPM: 28.3
2664 Male, age 75, both hemispheres 36.4
1995 Male, age 72, unknown 31.5
1913 Female, age 42, unknown 29.9
2668 Female, age 75, unknown 28.2
1839 Male, age 51, unknown 28.1
1796 Male, age 53, unknown 27.2
2261 Male, age 18, unknown 26.7
2587 Male, age 74, left hemisphere 25.7
1895 Male, age 76, right hemisphere 25.3
2087 Female, age 72, unknown 24.3
Ventral tegmental area
nTPM: 23.0
2223 Female, age 72, unknown 24.6
2410 Female, age 72, unknown 24.2
1942 Male, age 51, unknown 24.1
2021 Male, age 53, unknown 22.9
1915 Female, age 42, unknown 22.3
2218 Male, age 76, both hemispheres 20.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.2
Samples: 183

Max nTPM: 19.6
Min nTPM: 6.5
Std nTPM: 2.3
Median nTPM: 9.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 19.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 19.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 17.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 15.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 14.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 14.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 14.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 14.5
Min nTPM: 10.8
Sample A Female 14.5
Sample B Female 10.8
Sample C Male 13.3
Sample D Male 10.8
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 10.8
Min nTPM: 10.3
Sample A Female 10.8
Sample B Female 10.4
Sample C Male 10.3
Sample D Male 10.5
Periaqueductal gray
nTPM: 9.3
Samples: 3

Max nTPM: 10.1
Min nTPM: 8.2
Sample B Female 9.7
Sample C Male 10.1
Sample D Male 8.2
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.2
Sample A Female 11.5
Sample B Female 10.1
Sample C Male 9.2
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 14.4
Min nTPM: 14.0
Sample A Male 14.0
Sample B Male 14.0
Sample C Female 14.4
Sample D Female 14.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69080007 Antisense, RP_050324_01_C07, Mouse strain C57BL/6J (56 days, male) 3.2
74277713 Antisense, RP_051206_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo