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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:501.3 nTPM
HPA Brain:339.4 nTPM
GTEx:501.3 nTPM
FANTOM5:341.1 Scaled Tags Per Million
Pig:303.7 nTPM
Mouse:465.2 nTPM
Allen mouse:17.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.4
Sample id Sample description nTPM
Amygdala
nTPM: 291.7
2814 Male, age 76, right hemisphere 391.3
2695 Female, age 67, right hemisphere 294.1
2517 Female, age 94, left hemisphere 276.9
1987 Female, age 91, left hemisphere 263.9
2514 Male, age 75, right hemisphere 232.0
Basal amygdala
nTPM: 339.4
2827 Female, age 67, right hemisphere 380.7
2609 Male, age 75, right hemisphere 373.3
2685 Female, age 94, left hemisphere 354.0
1955 Male, age 76, both hemispheres 341.3
2243 Female, age 91, right hemisphere 299.8
2110 Male, age 80, left hemisphere 287.4
Central amygdala
nTPM: 334.4
2826 Female, age 94, left hemisphere 511.3
1905 Male, age 76, both hemispheres 388.0
2239 Male, age 80, left hemisphere 279.0
2515 Male, age 75, right hemisphere 254.1
2701 Female, age 91, right hemisphere 239.5
Corticomedial amygdala
nTPM: 278.3
2829 Male, age 80, left hemisphere 359.3
2535 Female, age 67, right hemisphere 307.6
2428 Male, age 75, right hemisphere 286.3
2429 Female, age 94, left hemisphere 260.5
2242 Female, age 91, right hemisphere 232.9
2240 Male, age 76, both hemispheres 223.4
Lateral amygdala
nTPM: 331.4
2534 Female, age 94, left hemisphere 454.9
1883 Male, age 76, both hemispheres 391.6
2256 Male, age 80, left hemisphere 324.9
2830 Female, age 67, right hemisphere 297.4
2516 Male, age 75, right hemisphere 282.9
2255 Female, age 91, right hemisphere 236.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

501.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 501.3
Samples: 181

Max nTPM: 1428.4
Min nTPM: 223.6
Std nTPM: 167.9
Median nTPM: 469.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1428.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1013.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 963.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 944.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 866.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 863.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 842.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 826.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 802.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 768.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 757.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 757.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 756.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 745.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 728.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 728.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 728.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 725.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 720.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 713.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 707.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 700.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 698.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 698.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 692.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 683.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 682.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 649.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 647.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 647.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 641.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 640.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 640.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 638.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 627.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 620.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 620.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 617.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 612.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 607.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 605.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 599.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 597.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 590.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 587.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 587.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 583.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 582.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 581.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 581.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 580.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 569.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 564.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 564.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 563.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 562.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 559.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 555.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 555.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 554.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 553.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 539.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 538.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 531.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 526.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 526.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 526.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 525.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 512.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 507.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 507.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 506.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 503.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 502.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 502.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 495.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 493.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 492.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 492.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 490.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 488.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 482.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 482.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 476.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 476.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 474.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 474.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 473.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 473.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 470.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 469.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 467.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 466.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 465.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 465.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 459.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 458.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 458.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 457.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 457.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 455.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 454.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 452.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 451.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 449.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 448.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 447.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 441.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 438.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 438.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 437.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 435.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 432.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 429.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 423.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 419.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 419.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 415.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 414.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 413.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 410.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 408.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 406.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 403.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 402.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 401.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 399.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 398.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 398.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 397.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 396.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 395.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 394.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 390.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 390.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 390.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 390.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 388.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 388.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 387.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 383.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 382.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 381.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 378.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 371.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 369.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 368.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 364.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 362.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 360.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 356.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 352.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 348.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 347.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 347.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 347.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 346.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 343.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 339.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 338.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 336.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 331.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 327.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 322.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 317.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 308.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 293.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 285.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 283.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 280.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 279.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 278.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 274.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 273.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 267.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 259.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 257.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 254.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 245.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 239.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 223.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

341.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 341.1
FF:10151-102I7 76 years, female 341.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.7
Pig sample Sample description nTPM
Amygdala
nTPM: 303.7
Samples: 4

Max nTPM: 439.7
Min nTPM: 244.1
Sample A Female 439.7
Sample B Female 244.1
Sample C Male 282.1
Sample D Male 248.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

465.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 465.3
Samples: 4

Max nTPM: 536.5
Min nTPM: 428.7
Sample A Male 461.8
Sample B Male 434.0
Sample C Female 536.5
Sample D Female 428.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.8
69524404 Antisense, RP_050419_04_C07, Mouse strain C57BL/6J (56 days, male) 17.8

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