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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:248.1 nTPM
HPA Brain:249.6 nTPM
GTEx:248.1 nTPM
FANTOM5:227.6 Scaled Tags Per Million
Pig:201.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 236.0
2565 Male, age 75, midline 317.5
2194 Female, age 79, both hemispheres 242.7
2048 Male, age 55, midline 213.3
1981 Female, age 72, midline 211.1
2816 Male, age 47, midline 195.5
Cervical spinal cord, dorsal horn
nTPM: 238.9
2297 Male, age 75, both hemispheres 320.1
1877 Male, age 55, unknown 243.0
2173 Female, age 72, unknown 232.1
2069 Male, age 47, both hemispheres 228.3
2721 Male, age 90, both hemispheres 220.8
2296 Male, age 66, both hemispheres 189.0
Cervical spinal cord, ventral horn
nTPM: 249.6
2480 Male, age 75, both hemispheres 346.3
2809 Male, age 90, both hemispheres 257.9
2820 Female, age 79, both hemispheres 256.3
2068 Male, age 55, unknown 251.6
2295 Male, age 66, both hemispheres 251.4
2098 Female, age 72, unknown 134.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 248.1
Samples: 204

Max nTPM: 514.2
Min nTPM: 140.2
Std nTPM: 63.8
Median nTPM: 239.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 514.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 482.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 447.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 446.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 440.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 420.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 416.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 388.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 383.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 376.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 373.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 372.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 369.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 353.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 346.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 344.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 343.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 341.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 339.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 332.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 324.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 316.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 315.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 314.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 314.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 312.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 311.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 307.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 304.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 304.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 304.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 302.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 301.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 300.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 299.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 293.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 293.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 290.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 290.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 287.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 286.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 286.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 285.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 285.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 282.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 281.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 279.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 278.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 276.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 276.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 275.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 274.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 271.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 270.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 269.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 269.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 268.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 267.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 266.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 266.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 265.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 265.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 264.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 264.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 262.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 261.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 260.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 259.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 259.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 258.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 258.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 256.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 256.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 255.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 255.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 253.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 251.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 251.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 251.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 250.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 249.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 249.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 249.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 249.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 249.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 248.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 248.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 247.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 247.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 246.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 246.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 246.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 246.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 245.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 245.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 244.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 243.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 243.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 243.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 241.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 241.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 239.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 239.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 238.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 237.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 237.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 237.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 236.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 235.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 234.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 234.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 233.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 232.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 231.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 231.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 230.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 229.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 229.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 229.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 228.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 228.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 228.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 226.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 225.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 225.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 225.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 223.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 223.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 221.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 221.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 220.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 220.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 220.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 220.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 219.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 218.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 218.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 217.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 217.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 215.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 214.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 213.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 212.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 211.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 210.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 210.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 210.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 209.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 209.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 209.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 206.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 206.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 206.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 205.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 205.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 204.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 202.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 201.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 200.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 200.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 200.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 198.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 197.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 197.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 195.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 193.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 192.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 192.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 192.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 192.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 192.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 191.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 191.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 190.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 188.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 185.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 185.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 184.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 183.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 183.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 182.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 180.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 179.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 179.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 178.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 177.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 176.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 173.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 171.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 169.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 167.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 167.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 164.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 164.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 164.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 162.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 159.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 158.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 156.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 151.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 151.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 149.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 148.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 140.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

227.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 227.6
FF:10181-103D1 60 years, female 284.4
FF:10159-103A6 76 years, female 170.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 201.6
Samples: 4

Max nTPM: 235.9
Min nTPM: 159.4
Sample A Female 235.9
Sample B Female 159.4
Sample C Male 188.3
Sample D Male 222.7
Ventral spinal cord
nTPM: 200.8
Samples: 4

Max nTPM: 222.0
Min nTPM: 169.9
Sample A Female 216.4
Sample B Female 194.7
Sample C Male 222.0
Sample D Male 169.9

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