MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.9 nTPM
HPA Brain:19.0 nTPM
GTEx:65.9 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:31.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2666 Male, age 74, left hemisphere 21.7
2586 Male, age 75, left hemisphere 18.9
1870 Female, age 42, unknown 17.4
2828 Female, age 72, unknown 17.3
1833 Male, age 53, unknown 16.5
2411 Female, age 72, unknown 15.2
1830 Male, age 51, unknown 15.0
1827 Male, age 72, unknown 14.5
2219 Male, age 76, both hemispheres 14.4
2019 Male, age 18, unknown 14.3
Dorsal raphe nucleus
nTPM: 14.5
2016 Female, age 72, unknown 15.7
2298 Female, age 72, unknown 15.3
1828 Male, age 53, unknown 14.8
2750 Male, age 76, both hemispheres 14.6
2047 Male, age 72, unknown 12.3
Inferior colliculus
nTPM: 15.5
1890 Male, age 53, unknown 17.4
2849 Male, age 72, unknown 16.5
1848 Female, age 42, unknown 14.3
2097 Female, age 72, unknown 13.6
Median raphe nucleus
nTPM: 14.3
2220 Male, age 76, midline 14.3
Periaquaductal grey, anterior
nTPM: 17.6
2502 Female, age 75, unknown 20.6
1947 Male, age 18, unknown 16.4
1795 Male, age 51, unknown 15.8
Periaquaductal grey, dorsal
nTPM: 14.0
1831 Male, age 72, unknown 14.4
1840 Male, age 53, unknown 14.3
2464 Female, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 13.4
Periaquaductal grey, lateral
nTPM: 14.2
2053 Male, age 18, unknown 15.1
2140 Male, age 76, both hemispheres 14.3
2272 Male, age 74, both hemispheres 13.2
Pretectal area
nTPM: 14.3
1817 Female, age 42, unknown 15.8
1815 Male, age 53, unknown 15.1
2224 Female, age 72, unknown 15.1
2007 Male, age 72, unknown 14.8
1816 Male, age 51, unknown 14.5
2273 Male, age 74, both hemispheres 14.1
2825 Male, age 18, unknown 13.9
2316 Male, age 76, right hemisphere 13.8
2667 Female, age 75, unknown 13.4
2407 Male, age 75, both hemispheres 13.1
1944 Female, age 72, unknown 13.0
Red nucleus
nTPM: 19.0
2503 Female, age 72, unknown 23.0
1865 Male, age 51, unknown 21.8
1904 Male, age 53, unknown 19.8
2769 Male, age 72, unknown 19.8
1821 Female, age 72, unknown 19.7
2725 Female, age 75, unknown 19.3
2588 Male, age 74, left hemisphere 19.1
2227 Male, age 72, unknown 18.7
2785 Male, age 18, unknown 18.2
2584 Male, age 75, left hemisphere 17.6
1954 Female, age 42, unknown 16.4
2823 Male, age 76, right hemisphere 14.4
Substantia nigra
nTPM: 17.0
2665 Male, age 74, both hemispheres 22.0
2699 Male, age 18, unknown 20.0
1851 Male, age 51, unknown 19.5
2409 Female, age 72, unknown 17.3
2590 Female, age 75, unknown 16.5
1916 Female, age 42, unknown 15.8
1889 Female, age 72, unknown 15.2
1941 Male, age 53, unknown 15.1
2241 Male, age 72, unknown 15.0
2583 Male, age 75, right hemisphere 13.2
Superior colliculus
nTPM: 16.1
2587 Male, age 74, left hemisphere 20.2
1913 Female, age 42, unknown 20.0
1995 Male, age 72, unknown 19.7
2261 Male, age 18, unknown 16.2
1796 Male, age 53, unknown 15.6
2664 Male, age 75, both hemispheres 15.1
2668 Female, age 75, unknown 14.2
1839 Male, age 51, unknown 13.8
2087 Female, age 72, unknown 13.5
1895 Male, age 76, right hemisphere 12.8
Ventral tegmental area
nTPM: 16.3
2410 Female, age 72, unknown 18.2
1915 Female, age 42, unknown 17.8
2223 Female, age 72, unknown 17.2
1942 Male, age 51, unknown 16.5
2218 Male, age 76, both hemispheres 14.3
2021 Male, age 53, unknown 13.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.9
Samples: 183

Max nTPM: 137.4
Min nTPM: 31.2
Std nTPM: 19.3
Median nTPM: 63.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 137.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 121.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 120.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 111.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 111.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 109.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 105.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 103.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 102.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 102.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 99.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.6
Sample A Female 17.4
Sample B Female 15.4
Sample C Male 13.6
Sample D Male 15.6
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 24.4
Min nTPM: 13.2
Sample A Female 24.4
Sample B Female 13.2
Sample C Male 14.2
Sample D Male 14.7
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 14.4
Min nTPM: 12.8
Sample B Female 12.8
Sample C Male 14.4
Sample D Male 14.3
Superior colliculi
nTPM: 17.8
Samples: 4

Max nTPM: 19.8
Min nTPM: 15.4
Sample A Female 19.8
Sample B Female 18.7
Sample C Male 17.4
Sample D Male 15.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 32.3
Min nTPM: 30.5
Sample A Male 32.3
Sample B Male 30.5
Sample C Female 30.7
Sample D Female 32.0

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