On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
84.6
nTPM
HPA Brain:
190.6
nTPM
GTEx:
84.6
nTPM
FANTOM5:
145.3
Scaled Tags Per Million
Macaque:
11.1
nTPM
Mouse:
359.5
nTPM
Rat:
315.2
nTPM
Pig:
334.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
190.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 153.0
2586
Male, age 75, left hemisphere
200.2
1827
Male, age 72, unknown
178.8
2019
Male, age 18, unknown
175.9
2828
Female, age 72, unknown
166.8
2219
Male, age 76, both hemispheres
165.6
2666
Male, age 74, left hemisphere
147.7
2411
Female, age 72, unknown
138.8
1870
Female, age 42, unknown
127.4
1833
Male, age 53, unknown
120.9
1830
Male, age 51, unknown
107.8
Dorsal raphe nucleus nTPM: 156.3
2298
Female, age 72, unknown
202.7
2047
Male, age 72, unknown
183.7
1828
Male, age 53, unknown
154.9
2750
Male, age 76, both hemispheres
138.4
2016
Female, age 72, unknown
101.7
Inferior colliculus nTPM: 154.0
2097
Female, age 72, unknown
181.7
1890
Male, age 53, unknown
153.4
1848
Female, age 42, unknown
149.3
2849
Male, age 72, unknown
131.5
Median raphe nucleus nTPM: 175.7
2220
Male, age 76, midline
175.7
Periaquaductal grey, anterior nTPM: 155.0
1795
Male, age 51, unknown
169.4
1947
Male, age 18, unknown
165.9
2502
Female, age 75, unknown
129.7
Periaquaductal grey, dorsal nTPM: 126.6
1840
Male, age 53, unknown
145.9
1831
Male, age 72, unknown
134.5
2850
Male, age 76, both hemispheres
113.6
2464
Female, age 72, unknown
112.3
Periaquaductal grey, lateral nTPM: 119.5
2272
Male, age 74, both hemispheres
136.2
2053
Male, age 18, unknown
119.7
2140
Male, age 76, both hemispheres
102.5
Pretectal area nTPM: 184.0
1817
Female, age 42, unknown
272.1
1944
Female, age 72, unknown
267.1
1816
Male, age 51, unknown
263.6
2007
Male, age 72, unknown
263.2
1815
Male, age 53, unknown
199.7
2667
Female, age 75, unknown
182.5
2224
Female, age 72, unknown
141.7
2273
Male, age 74, both hemispheres
121.7
2825
Male, age 18, unknown
116.5
2407
Male, age 75, both hemispheres
114.2
2316
Male, age 76, right hemisphere
81.4
Red nucleus nTPM: 129.7
2785
Male, age 18, unknown
159.7
1821
Female, age 72, unknown
158.5
2725
Female, age 75, unknown
141.7
2584
Male, age 75, left hemisphere
137.8
2588
Male, age 74, left hemisphere
135.5
1954
Female, age 42, unknown
127.8
1865
Male, age 51, unknown
119.3
1904
Male, age 53, unknown
118.0
2503
Female, age 72, unknown
115.4
2769
Male, age 72, unknown
115.3
2227
Male, age 72, unknown
114.9
2823
Male, age 76, right hemisphere
112.1
Substantia nigra nTPM: 190.6
1916
Female, age 42, unknown
293.2
1889
Female, age 72, unknown
250.1
1851
Male, age 51, unknown
222.2
1941
Male, age 53, unknown
215.7
2665
Male, age 74, both hemispheres
192.2
2699
Male, age 18, unknown
152.0
2583
Male, age 75, right hemisphere
150.7
2241
Male, age 72, unknown
148.0
2409
Female, age 72, unknown
144.2
2590
Female, age 75, unknown
138.0
Superior colliculus nTPM: 155.4
2087
Female, age 72, unknown
227.0
2668
Female, age 75, unknown
203.8
2261
Male, age 18, unknown
170.5
1796
Male, age 53, unknown
170.2
1895
Male, age 76, right hemisphere
148.3
2664
Male, age 75, both hemispheres
136.0
1913
Female, age 42, unknown
131.1
1839
Male, age 51, unknown
127.0
2587
Male, age 74, left hemisphere
124.2
1995
Male, age 72, unknown
115.6
Ventral tegmental area nTPM: 163.5
2410
Female, age 72, unknown
209.0
1915
Female, age 42, unknown
197.1
2218
Male, age 76, both hemispheres
189.8
1942
Male, age 51, unknown
139.4
2223
Female, age 72, unknown
127.3
2021
Male, age 53, unknown
118.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
84.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 84.6
Samples: 183
Max nTPM: 274.7
Min nTPM: 30.5
Std nTPM: 42.9
Median nTPM: 71.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
274.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
241.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
225.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
218.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
209.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
190.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
186.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
179.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
164.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
163.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
161.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
161.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
158.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
153.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
152.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
150.4
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
150.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
145.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
145.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
143.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
143.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
142.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
140.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
136.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
134.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
130.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
126.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
126.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
125.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
124.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
122.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
122.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
120.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
120.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
116.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
115.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
114.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
113.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
112.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
112.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
111.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
110.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
110.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
109.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
107.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
102.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
100.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
95.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
95.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
94.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
94.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
94.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
93.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
90.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
89.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
89.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
88.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
87.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
85.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
84.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
84.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
84.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
84.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
83.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
83.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
82.7
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
82.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
82.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
81.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
81.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
80.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
80.4
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
79.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
79.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
78.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
78.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
77.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
77.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
77.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
76.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
75.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
75.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
75.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
74.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
74.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
74.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
73.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
72.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
71.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
71.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
71.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
71.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
70.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
70.5
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
70.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
70.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
69.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
69.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
69.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
68.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
68.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
68.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
68.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
67.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
67.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
67.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
67.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
67.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
66.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
66.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
66.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
65.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
65.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
65.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
65.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
64.6
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
64.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
64.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
64.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
62.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
62.7
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
62.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
61.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
60.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
60.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
60.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
60.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
60.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
59.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
59.5
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
59.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
58.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
58.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
58.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
56.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
54.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
54.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
54.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
54.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
54.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
53.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
53.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
53.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
52.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
52.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
52.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
52.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
52.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
51.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
51.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
51.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
50.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
50.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
50.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
49.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
48.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
48.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
47.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
46.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
46.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
44.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
44.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
43.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
43.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
42.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
42.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
42.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
41.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
41.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
41.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
40.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
40.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
39.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
39.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
39.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
38.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
37.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
35.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
35.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
34.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
32.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
32.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
30.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 244.1
Samples: 1
Max nTPM: 244.1
Min nTPM: 244.1
Sample A
244.1
Midbrain nTPM: 213.1
Samples: 1
Max nTPM: 213.1
Min nTPM: 213.1
Sample A
213.1
Superior colliculi nTPM: 285.3
Samples: 1
Max nTPM: 285.3
Min nTPM: 285.3
Sample A
285.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
334.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 334.1
Samples: 3
Max nTPM: 404.3
Min nTPM: 220.1
Sample A
Female
404.3
Sample B
Female
220.1
Sample C
Male
378.0
Midbrain nTPM: 321.1
Samples: 3
Max nTPM: 406.7
Min nTPM: 235.2
Sample B
Female
235.2
Sample C
Male
406.7
Sample D
Male
321.3
Periaqueductal gray nTPM: 219.4
Samples: 3
Max nTPM: 258.1
Min nTPM: 187.4
Sample B
Female
212.6
Sample C
Male
258.1
Sample D
Male
187.4
Superior colliculi nTPM: 327.3
Samples: 4
Max nTPM: 390.8
Min nTPM: 247.8
Sample A
Female
351.5
Sample B
Female
247.8
Sample C
Male
390.8
Sample D
Male
319.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
359.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 359.5
Samples: 4
Max nTPM: 371.5
Min nTPM: 334.8
Sample A
362.0
Sample B
334.8
Sample C
369.5
Sample D
371.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
315.2
Rat sample
Sample description
nTPM
Midbrain nTPM: 315.3
Samples: 4
Max nTPM: 327.4
Min nTPM: 294.4
Sample A
316.6
Sample A
327.4
Sample A
322.6
Sample A
294.4
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The Human Protein Atlas project is funded
