MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.6 nTPM
HPA Brain:189.9 nTPM
GTEx:84.6 nTPM
FANTOM5:145.3 Scaled Tags Per Million
Pig:325.5 nTPM
Mouse:346.5 nTPM
Allen mouse:22.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 189.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.4
2586 Male, age 75, left hemisphere 199.7
1827 Male, age 72, unknown 178.1
2019 Male, age 18, unknown 175.3
2828 Female, age 72, unknown 166.2
2219 Male, age 76, both hemispheres 164.8
2666 Male, age 74, left hemisphere 147.1
2411 Female, age 72, unknown 138.3
1870 Female, age 42, unknown 127.0
1833 Male, age 53, unknown 120.4
1830 Male, age 51, unknown 107.4
Dorsal raphe nucleus
nTPM: 155.7
2298 Female, age 72, unknown 201.9
2047 Male, age 72, unknown 183.1
1828 Male, age 53, unknown 154.3
2750 Male, age 76, both hemispheres 137.8
2016 Female, age 72, unknown 101.3
Inferior colliculus
nTPM: 153.4
2097 Female, age 72, unknown 181.0
1890 Male, age 53, unknown 152.8
1848 Female, age 42, unknown 148.7
2849 Male, age 72, unknown 131.0
Median raphe nucleus
nTPM: 174.9
2220 Male, age 76, midline 174.9
Periaquaductal grey, anterior
nTPM: 154.4
1795 Male, age 51, unknown 168.7
1947 Male, age 18, unknown 165.3
2502 Female, age 75, unknown 129.2
Periaquaductal grey, dorsal
nTPM: 126.1
1840 Male, age 53, unknown 145.4
1831 Male, age 72, unknown 133.9
2850 Male, age 76, both hemispheres 113.1
2464 Female, age 72, unknown 111.9
Periaquaductal grey, lateral
nTPM: 119.0
2272 Male, age 74, both hemispheres 135.7
2053 Male, age 18, unknown 119.3
2140 Male, age 76, both hemispheres 102.0
Pretectal area
nTPM: 183.3
1817 Female, age 42, unknown 271.1
1944 Female, age 72, unknown 266.2
1816 Male, age 51, unknown 262.8
2007 Male, age 72, unknown 262.2
1815 Male, age 53, unknown 199.1
2667 Female, age 75, unknown 181.9
2224 Female, age 72, unknown 141.1
2273 Male, age 74, both hemispheres 121.3
2825 Male, age 18, unknown 116.0
2407 Male, age 75, both hemispheres 113.9
2316 Male, age 76, right hemisphere 81.0
Red nucleus
nTPM: 129.2
2785 Male, age 18, unknown 159.1
1821 Female, age 72, unknown 158.0
2725 Female, age 75, unknown 141.1
2584 Male, age 75, left hemisphere 137.5
2588 Male, age 74, left hemisphere 135.1
1954 Female, age 42, unknown 127.4
1865 Male, age 51, unknown 118.8
1904 Male, age 53, unknown 117.4
2503 Female, age 72, unknown 115.0
2769 Male, age 72, unknown 114.8
2227 Male, age 72, unknown 114.5
2823 Male, age 76, right hemisphere 111.5
Substantia nigra
nTPM: 189.9
1916 Female, age 42, unknown 291.9
1889 Female, age 72, unknown 249.1
1851 Male, age 51, unknown 221.3
1941 Male, age 53, unknown 214.9
2665 Male, age 74, both hemispheres 191.4
2699 Male, age 18, unknown 151.4
2583 Male, age 75, right hemisphere 150.4
2241 Male, age 72, unknown 147.5
2409 Female, age 72, unknown 143.8
2590 Female, age 75, unknown 137.5
Superior colliculus
nTPM: 154.8
2087 Female, age 72, unknown 226.2
2668 Female, age 75, unknown 203.0
2261 Male, age 18, unknown 169.8
1796 Male, age 53, unknown 169.6
1895 Male, age 76, right hemisphere 147.7
2664 Male, age 75, both hemispheres 135.6
1913 Female, age 42, unknown 130.6
1839 Male, age 51, unknown 126.6
2587 Male, age 74, left hemisphere 123.8
1995 Male, age 72, unknown 115.1
Ventral tegmental area
nTPM: 162.9
2410 Female, age 72, unknown 208.2
1915 Female, age 42, unknown 196.4
2218 Male, age 76, both hemispheres 189.0
1942 Male, age 51, unknown 138.9
2223 Female, age 72, unknown 126.8
2021 Male, age 53, unknown 118.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 84.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.6
Samples: 183

Max nTPM: 274.7
Min nTPM: 30.5
Std nTPM: 42.9
Median nTPM: 71.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 274.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 241.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 225.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 218.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 209.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 190.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 186.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 179.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 164.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 163.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 161.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 145.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.3
FF:10158-103A5 76 years, female 145.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 325.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 296.6
Samples: 4

Max nTPM: 401.7
Min nTPM: 189.3
Sample A Female 401.7
Sample B Female 219.3
Sample C Male 376.2
Sample D Male 189.3
Midbrain
nTPM: 302.6
Samples: 4

Max nTPM: 405.5
Min nTPM: 234.3
Sample A Female 249.8
Sample B Female 234.3
Sample C Male 405.5
Sample D Male 320.6
Periaqueductal gray
nTPM: 218.9
Samples: 3

Max nTPM: 257.6
Min nTPM: 187.1
Sample B Female 212.0
Sample C Male 257.6
Sample D Male 187.1
Superior colliculi
nTPM: 325.6
Samples: 4

Max nTPM: 388.9
Min nTPM: 246.7
Sample A Female 349.1
Sample B Female 246.7
Sample C Male 388.9
Sample D Male 317.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 346.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 346.5
Samples: 4

Max nTPM: 362.8
Min nTPM: 319.6
Sample A Male 362.8
Sample B Male 353.9
Sample C Female 349.7
Sample D Female 319.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.2
100144120 Antisense, RP_110407_02_H10, Mouse strain C57BL/6J (56 days, male) 22.2

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