On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
228.3
nTPM
HPA Brain:
398.8
nTPM
GTEx:
228.3
nTPM
FANTOM5:
118.8
Scaled Tags Per Million
Macaque:
236.6
nTPM
Mouse:
205.5
nTPM
Rat:
164.7
nTPM
Pig:
522.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
398.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 295.0
2666
Male, age 74, left hemisphere
432.6
2219
Male, age 76, both hemispheres
375.5
2586
Male, age 75, left hemisphere
318.8
1827
Male, age 72, unknown
317.0
1870
Female, age 42, unknown
285.9
2411
Female, age 72, unknown
281.3
1833
Male, age 53, unknown
255.0
2828
Female, age 72, unknown
244.1
2019
Male, age 18, unknown
221.8
1830
Male, age 51, unknown
217.9
Dorsal raphe nucleus nTPM: 295.0
2298
Female, age 72, unknown
345.9
2047
Male, age 72, unknown
341.3
1828
Male, age 53, unknown
296.3
2750
Male, age 76, both hemispheres
271.3
2016
Female, age 72, unknown
220.1
Inferior colliculus nTPM: 250.8
2849
Male, age 72, unknown
275.9
1848
Female, age 42, unknown
253.6
2097
Female, age 72, unknown
241.4
1890
Male, age 53, unknown
232.2
Median raphe nucleus nTPM: 383.9
2220
Male, age 76, midline
383.9
Periaquaductal grey, anterior nTPM: 295.2
1947
Male, age 18, unknown
318.9
1795
Male, age 51, unknown
318.5
2502
Female, age 75, unknown
248.3
Periaquaductal grey, dorsal nTPM: 243.1
1840
Male, age 53, unknown
305.0
2850
Male, age 76, both hemispheres
244.3
1831
Male, age 72, unknown
235.4
2464
Female, age 72, unknown
187.5
Periaquaductal grey, lateral nTPM: 214.6
2053
Male, age 18, unknown
226.1
2272
Male, age 74, both hemispheres
210.9
2140
Male, age 76, both hemispheres
206.9
Pretectal area nTPM: 287.5
2007
Male, age 72, unknown
369.1
1816
Male, age 51, unknown
343.0
1944
Female, age 72, unknown
331.5
1817
Female, age 42, unknown
331.3
2224
Female, age 72, unknown
318.9
1815
Male, age 53, unknown
303.0
2667
Female, age 75, unknown
298.2
2825
Male, age 18, unknown
280.2
2407
Male, age 75, both hemispheres
238.0
2316
Male, age 76, right hemisphere
182.4
2273
Male, age 74, both hemispheres
166.7
Red nucleus nTPM: 213.7
2584
Male, age 75, left hemisphere
370.3
1821
Female, age 72, unknown
232.3
2785
Male, age 18, unknown
231.8
2725
Female, age 75, unknown
231.2
2588
Male, age 74, left hemisphere
218.2
2769
Male, age 72, unknown
194.9
1954
Female, age 42, unknown
188.9
2227
Male, age 72, unknown
188.5
1904
Male, age 53, unknown
183.5
2503
Female, age 72, unknown
179.0
2823
Male, age 76, right hemisphere
177.3
1865
Male, age 51, unknown
169.0
Substantia nigra nTPM: 398.8
1916
Female, age 42, unknown
666.3
1851
Male, age 51, unknown
482.7
2665
Male, age 74, both hemispheres
446.6
1941
Male, age 53, unknown
410.1
2241
Male, age 72, unknown
377.7
2699
Male, age 18, unknown
375.7
1889
Female, age 72, unknown
353.6
2409
Female, age 72, unknown
328.9
2583
Male, age 75, right hemisphere
312.7
2590
Female, age 75, unknown
233.4
Superior colliculus nTPM: 261.9
2668
Female, age 75, unknown
419.0
1796
Male, age 53, unknown
320.7
2261
Male, age 18, unknown
265.4
2664
Male, age 75, both hemispheres
265.2
2087
Female, age 72, unknown
256.5
1839
Male, age 51, unknown
256.1
1895
Male, age 76, right hemisphere
248.3
2587
Male, age 74, left hemisphere
233.5
1913
Female, age 42, unknown
188.3
1995
Male, age 72, unknown
166.5
Ventral tegmental area nTPM: 384.6
1915
Female, age 42, unknown
486.3
2218
Male, age 76, both hemispheres
479.8
2410
Female, age 72, unknown
403.4
1942
Male, age 51, unknown
364.7
2223
Female, age 72, unknown
297.5
2021
Male, age 53, unknown
275.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
228.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 228.3
Samples: 183
Max nTPM: 825.4
Min nTPM: 73.4
Std nTPM: 148.1
Median nTPM: 179.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
825.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
727.8
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
695.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
678.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
631.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
626.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
618.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
584.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
553.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
539.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
538.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
531.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
525.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
493.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
490.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
475.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
459.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
437.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
428.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
425.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
400.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
393.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
392.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
390.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
388.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
385.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
385.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
380.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
373.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
354.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
347.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
347.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
342.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
341.1
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
331.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
325.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
324.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
316.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
302.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
296.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
296.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
292.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
290.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
290.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
289.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
286.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
282.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
281.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
277.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
275.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
270.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
269.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
268.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
267.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
264.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
263.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
259.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
258.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
256.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
253.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
253.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
250.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
249.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
249.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
245.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
240.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
239.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
231.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
229.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
229.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
228.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
228.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
228.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
222.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
218.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
218.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
214.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
211.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
200.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
199.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
199.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
195.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
195.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
193.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
192.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
189.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
189.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
188.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
184.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
184.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
180.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
179.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
179.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
177.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
172.2
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
172.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
171.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
168.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
164.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
161.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
161.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
160.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
159.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
157.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
157.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
156.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
154.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
153.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
152.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
151.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
147.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
145.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
145.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
144.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
143.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
141.8
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
141.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
139.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
139.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
138.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
136.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
136.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
134.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
134.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
129.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
129.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
129.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
129.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
127.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
126.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
125.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
125.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
122.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
122.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
122.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
122.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
120.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
120.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
118.1
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
117.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
117.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
116.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
116.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
116.2
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
114.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
113.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
112.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
111.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
111.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
108.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
108.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
108.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
106.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
104.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
104.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
100.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
98.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
97.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
96.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
95.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
93.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
92.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
92.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
89.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
89.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
89.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
89.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
88.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
87.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
87.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
87.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
86.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
85.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
84.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
84.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
83.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
83.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
83.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
82.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
79.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
75.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
74.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
73.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
236.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 148.5
Samples: 1
Max nTPM: 148.5
Min nTPM: 148.5
Sample A
148.5
Midbrain nTPM: 190.3
Samples: 1
Max nTPM: 190.3
Min nTPM: 190.3
Sample A
190.3
Superior colliculi nTPM: 236.6
Samples: 1
Max nTPM: 236.6
Min nTPM: 236.6
Sample A
236.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
522.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 522.0
Samples: 3
Max nTPM: 644.7
Min nTPM: 320.6
Sample A
Female
600.6
Sample B
Female
320.6
Sample C
Male
644.7
Midbrain nTPM: 522.1
Samples: 3
Max nTPM: 631.7
Min nTPM: 333.7
Sample B
Female
333.7
Sample C
Male
631.7
Sample D
Male
600.8
Periaqueductal gray nTPM: 391.0
Samples: 3
Max nTPM: 530.2
Min nTPM: 309.2
Sample B
Female
309.2
Sample C
Male
530.2
Sample D
Male
333.6
Superior colliculi nTPM: 473.0
Samples: 4
Max nTPM: 580.7
Min nTPM: 272.3
Sample A
Female
580.7
Sample B
Female
272.3
Sample C
Male
495.6
Sample D
Male
543.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
205.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 205.5
Samples: 4
Max nTPM: 222.4
Min nTPM: 187.8
Sample A
187.8
Sample B
222.4
Sample C
211.7
Sample D
200.1
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
164.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 164.7
Samples: 4
Max nTPM: 179.6
Min nTPM: 149.7
Sample A
163.8
Sample A
179.6
Sample A
165.8
Sample A
149.7
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The Human Protein Atlas project is funded
