MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:129.3 nTPM
HPA Brain:70.5 nTPM
GTEx:129.3 nTPM
FANTOM5:111.1 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:29.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 70.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.6
1870 Female, age 42, unknown 73.4
2586 Male, age 75, left hemisphere 73.4
1833 Male, age 53, unknown 69.0
2411 Female, age 72, unknown 65.0
2019 Male, age 18, unknown 64.6
1827 Male, age 72, unknown 62.7
2219 Male, age 76, both hemispheres 61.2
1830 Male, age 51, unknown 60.6
2666 Male, age 74, left hemisphere 59.5
2828 Female, age 72, unknown 56.4
Dorsal raphe nucleus
nTPM: 63.0
2298 Female, age 72, unknown 78.5
2750 Male, age 76, both hemispheres 66.3
2047 Male, age 72, unknown 59.4
2016 Female, age 72, unknown 59.2
1828 Male, age 53, unknown 51.7
Inferior colliculus
nTPM: 61.5
2097 Female, age 72, unknown 66.9
2849 Male, age 72, unknown 63.9
1848 Female, age 42, unknown 63.6
1890 Male, age 53, unknown 51.4
Median raphe nucleus
nTPM: 66.6
2220 Male, age 76, midline 66.6
Periaquaductal grey, anterior
nTPM: 64.9
2502 Female, age 75, unknown 71.7
1947 Male, age 18, unknown 61.6
1795 Male, age 51, unknown 61.4
Periaquaductal grey, dorsal
nTPM: 55.8
1840 Male, age 53, unknown 61.0
2850 Male, age 76, both hemispheres 60.0
1831 Male, age 72, unknown 56.7
2464 Female, age 72, unknown 45.2
Periaquaductal grey, lateral
nTPM: 57.5
2053 Male, age 18, unknown 64.8
2272 Male, age 74, both hemispheres 55.8
2140 Male, age 76, both hemispheres 51.9
Pretectal area
nTPM: 63.1
1944 Female, age 72, unknown 69.3
1815 Male, age 53, unknown 68.6
2224 Female, age 72, unknown 67.9
1816 Male, age 51, unknown 67.1
1817 Female, age 42, unknown 67.1
2007 Male, age 72, unknown 65.0
2825 Male, age 18, unknown 64.2
2667 Female, age 75, unknown 60.6
2316 Male, age 76, right hemisphere 59.7
2273 Male, age 74, both hemispheres 57.4
2407 Male, age 75, both hemispheres 47.1
Red nucleus
nTPM: 70.5
1904 Male, age 53, unknown 81.4
1821 Female, age 72, unknown 80.7
2503 Female, age 72, unknown 80.0
1865 Male, age 51, unknown 77.8
2785 Male, age 18, unknown 77.1
2227 Male, age 72, unknown 71.0
1954 Female, age 42, unknown 68.0
2769 Male, age 72, unknown 66.4
2725 Female, age 75, unknown 65.4
2823 Male, age 76, right hemisphere 63.8
2584 Male, age 75, left hemisphere 61.4
2588 Male, age 74, left hemisphere 53.3
Substantia nigra
nTPM: 58.5
2699 Male, age 18, unknown 64.4
1851 Male, age 51, unknown 63.6
1889 Female, age 72, unknown 61.5
1941 Male, age 53, unknown 61.4
1916 Female, age 42, unknown 60.9
2590 Female, age 75, unknown 56.8
2665 Male, age 74, both hemispheres 55.4
2583 Male, age 75, right hemisphere 53.9
2241 Male, age 72, unknown 53.7
2409 Female, age 72, unknown 53.6
Superior colliculus
nTPM: 64.5
1913 Female, age 42, unknown 81.1
2587 Male, age 74, left hemisphere 76.1
1895 Male, age 76, right hemisphere 71.1
1995 Male, age 72, unknown 69.8
2668 Female, age 75, unknown 65.5
1796 Male, age 53, unknown 64.3
1839 Male, age 51, unknown 58.2
2087 Female, age 72, unknown 56.7
2664 Male, age 75, both hemispheres 54.5
2261 Male, age 18, unknown 47.4
Ventral tegmental area
nTPM: 61.0
2223 Female, age 72, unknown 68.7
2410 Female, age 72, unknown 65.2
1915 Female, age 42, unknown 61.4
2218 Male, age 76, both hemispheres 58.3
1942 Male, age 51, unknown 57.6
2021 Male, age 53, unknown 55.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 129.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 129.3
Samples: 183

Max nTPM: 332.8
Min nTPM: 56.8
Std nTPM: 40.0
Median nTPM: 125.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 332.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 308.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 245.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 245.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 239.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 222.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 221.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 221.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 209.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 207.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 204.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 111.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.1
FF:10158-103A5 76 years, female 111.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.0
Samples: 4

Max nTPM: 39.4
Min nTPM: 22.9
Sample A Female 39.4
Sample B Female 22.9
Sample C Male 26.5
Sample D Male 23.1
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 39.8
Min nTPM: 18.4
Sample A Female 39.8
Sample B Female 27.8
Sample C Male 18.4
Sample D Male 27.4
Periaqueductal gray
nTPM: 31.9
Samples: 3

Max nTPM: 37.7
Min nTPM: 27.0
Sample B Female 27.0
Sample C Male 37.7
Sample D Male 30.9
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 40.9
Min nTPM: 18.9
Sample A Female 40.9
Sample B Female 20.7
Sample C Male 18.9
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 34.1
Min nTPM: 26.0
Sample A Male 34.1
Sample B Male 29.5
Sample C Female 26.0
Sample D Female 28.9

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