MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.6 nTPM
HPA Brain:94.1 nTPM
GTEx:75.6 nTPM
FANTOM5:120.2 Scaled Tags Per Million
Pig:104.5 nTPM
Mouse:51.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 94.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.0
2666 Male, age 74, left hemisphere 98.5
2586 Male, age 75, left hemisphere 84.4
1827 Male, age 72, unknown 79.6
2828 Female, age 72, unknown 73.3
2219 Male, age 76, both hemispheres 70.5
2019 Male, age 18, unknown 70.2
1870 Female, age 42, unknown 68.4
2411 Female, age 72, unknown 66.2
1833 Male, age 53, unknown 65.4
1830 Male, age 51, unknown 63.3
Dorsal raphe nucleus
nTPM: 73.3
2047 Male, age 72, unknown 87.9
2298 Female, age 72, unknown 76.8
2750 Male, age 76, both hemispheres 73.6
1828 Male, age 53, unknown 71.4
2016 Female, age 72, unknown 57.0
Inferior colliculus
nTPM: 69.9
2849 Male, age 72, unknown 79.2
1848 Female, age 42, unknown 69.5
1890 Male, age 53, unknown 67.1
2097 Female, age 72, unknown 63.9
Median raphe nucleus
nTPM: 94.1
2220 Male, age 76, midline 94.1
Periaquaductal grey, anterior
nTPM: 74.2
1795 Male, age 51, unknown 82.2
1947 Male, age 18, unknown 73.5
2502 Female, age 75, unknown 66.8
Periaquaductal grey, dorsal
nTPM: 65.6
2850 Male, age 76, both hemispheres 75.6
1840 Male, age 53, unknown 66.2
1831 Male, age 72, unknown 62.1
2464 Female, age 72, unknown 58.7
Periaquaductal grey, lateral
nTPM: 64.0
2140 Male, age 76, both hemispheres 68.5
2272 Male, age 74, both hemispheres 64.8
2053 Male, age 18, unknown 58.8
Pretectal area
nTPM: 75.2
1817 Female, age 42, unknown 94.0
2007 Male, age 72, unknown 92.6
1816 Male, age 51, unknown 88.1
1944 Female, age 72, unknown 78.7
1815 Male, age 53, unknown 76.4
2667 Female, age 75, unknown 75.3
2825 Male, age 18, unknown 72.1
2224 Female, age 72, unknown 69.9
2407 Male, age 75, both hemispheres 68.4
2316 Male, age 76, right hemisphere 58.1
2273 Male, age 74, both hemispheres 53.1
Red nucleus
nTPM: 69.3
2584 Male, age 75, left hemisphere 85.8
2725 Female, age 75, unknown 81.5
2785 Male, age 18, unknown 77.7
2588 Male, age 74, left hemisphere 76.0
1821 Female, age 72, unknown 67.4
2769 Male, age 72, unknown 66.1
1954 Female, age 42, unknown 65.6
2227 Male, age 72, unknown 63.5
1865 Male, age 51, unknown 63.4
2503 Female, age 72, unknown 63.0
2823 Male, age 76, right hemisphere 63.0
1904 Male, age 53, unknown 58.3
Substantia nigra
nTPM: 76.4
2665 Male, age 74, both hemispheres 92.9
1941 Male, age 53, unknown 92.0
1916 Female, age 42, unknown 90.4
1889 Female, age 72, unknown 83.0
1851 Male, age 51, unknown 79.2
2699 Male, age 18, unknown 77.7
2583 Male, age 75, right hemisphere 75.4
2241 Male, age 72, unknown 61.4
2590 Female, age 75, unknown 59.6
2409 Female, age 72, unknown 52.6
Superior colliculus
nTPM: 69.4
1796 Male, age 53, unknown 80.8
2668 Female, age 75, unknown 79.9
2664 Male, age 75, both hemispheres 76.6
2087 Female, age 72, unknown 72.7
2261 Male, age 18, unknown 69.2
2587 Male, age 74, left hemisphere 68.2
1839 Male, age 51, unknown 66.7
1895 Male, age 76, right hemisphere 64.8
1913 Female, age 42, unknown 61.3
1995 Male, age 72, unknown 53.6
Ventral tegmental area
nTPM: 72.3
2218 Male, age 76, both hemispheres 81.3
1915 Female, age 42, unknown 74.9
2223 Female, age 72, unknown 73.7
2410 Female, age 72, unknown 69.7
1942 Male, age 51, unknown 67.2
2021 Male, age 53, unknown 67.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 75.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.6
Samples: 183

Max nTPM: 141.5
Min nTPM: 43.2
Std nTPM: 14.6
Median nTPM: 73.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 141.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 118.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 117.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 117.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 108.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 107.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 105.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 103.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 101.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 100.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 100.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.2
FF:10158-103A5 76 years, female 120.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.5
Samples: 4

Max nTPM: 103.8
Min nTPM: 64.3
Sample A Female 103.8
Sample B Female 70.3
Sample C Male 95.4
Sample D Male 64.3
Midbrain
nTPM: 93.2
Samples: 4

Max nTPM: 104.3
Min nTPM: 75.8
Sample A Female 102.9
Sample B Female 75.8
Sample C Male 104.3
Sample D Male 89.6
Periaqueductal gray
nTPM: 70.0
Samples: 3

Max nTPM: 81.0
Min nTPM: 61.7
Sample B Female 67.3
Sample C Male 81.0
Sample D Male 61.7
Superior colliculi
nTPM: 104.5
Samples: 4

Max nTPM: 126.6
Min nTPM: 87.9
Sample A Female 112.1
Sample B Female 87.9
Sample C Male 126.6
Sample D Male 91.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.3
Samples: 4

Max nTPM: 55.9
Min nTPM: 46.3
Sample A Male 55.9
Sample B Male 50.2
Sample C Female 46.3
Sample D Female 52.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71496288 Antisense, RP_050913_04_C01, Mouse strain C57BL/6J (56 days, male) 0.0

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