MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:137.9 nTPM
GTEx:15.7 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:74.4 nTPM
Mouse:36.7 nTPM
Allen mouse:9.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 137.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.4
2019 Male, age 18, unknown 138.1
2666 Male, age 74, left hemisphere 130.3
2828 Female, age 72, unknown 128.1
2586 Male, age 75, left hemisphere 127.0
1827 Male, age 72, unknown 121.3
2219 Male, age 76, both hemispheres 106.4
2411 Female, age 72, unknown 95.9
1870 Female, age 42, unknown 93.9
1833 Male, age 53, unknown 83.5
1830 Male, age 51, unknown 79.1
Dorsal raphe nucleus
nTPM: 85.1
2750 Male, age 76, both hemispheres 97.4
2298 Female, age 72, unknown 90.4
1828 Male, age 53, unknown 89.9
2047 Male, age 72, unknown 84.6
2016 Female, age 72, unknown 63.2
Inferior colliculus
nTPM: 77.7
1848 Female, age 42, unknown 87.2
2097 Female, age 72, unknown 79.3
2849 Male, age 72, unknown 73.7
1890 Male, age 53, unknown 70.5
Median raphe nucleus
nTPM: 82.4
2220 Male, age 76, midline 82.4
Periaquaductal grey, anterior
nTPM: 119.4
1795 Male, age 51, unknown 141.6
2502 Female, age 75, unknown 125.8
1947 Male, age 18, unknown 90.8
Periaquaductal grey, dorsal
nTPM: 80.5
1831 Male, age 72, unknown 95.8
2464 Female, age 72, unknown 81.5
1840 Male, age 53, unknown 74.5
2850 Male, age 76, both hemispheres 70.3
Periaquaductal grey, lateral
nTPM: 78.7
2053 Male, age 18, unknown 87.3
2272 Male, age 74, both hemispheres 81.9
2140 Male, age 76, both hemispheres 66.8
Pretectal area
nTPM: 137.9
1816 Male, age 51, unknown 198.3
1944 Female, age 72, unknown 188.9
2007 Male, age 72, unknown 183.3
1817 Female, age 42, unknown 173.3
1815 Male, age 53, unknown 163.2
2667 Female, age 75, unknown 137.7
2407 Male, age 75, both hemispheres 104.7
2316 Male, age 76, right hemisphere 96.9
2224 Female, age 72, unknown 96.8
2273 Male, age 74, both hemispheres 93.8
2825 Male, age 18, unknown 79.8
Red nucleus
nTPM: 94.8
2785 Male, age 18, unknown 158.3
2584 Male, age 75, left hemisphere 103.6
2823 Male, age 76, right hemisphere 101.6
2588 Male, age 74, left hemisphere 99.2
2503 Female, age 72, unknown 91.9
1904 Male, age 53, unknown 87.9
2725 Female, age 75, unknown 86.8
2769 Male, age 72, unknown 84.5
2227 Male, age 72, unknown 83.6
1954 Female, age 42, unknown 83.3
1865 Male, age 51, unknown 79.2
1821 Female, age 72, unknown 77.7
Substantia nigra
nTPM: 93.9
1889 Female, age 72, unknown 143.8
1941 Male, age 53, unknown 120.7
1851 Male, age 51, unknown 99.5
1916 Female, age 42, unknown 99.4
2583 Male, age 75, right hemisphere 94.7
2665 Male, age 74, both hemispheres 92.9
2409 Female, age 72, unknown 79.7
2241 Male, age 72, unknown 73.3
2590 Female, age 75, unknown 69.4
2699 Male, age 18, unknown 65.9
Superior colliculus
nTPM: 120.8
2087 Female, age 72, unknown 160.1
2668 Female, age 75, unknown 148.4
2261 Male, age 18, unknown 144.2
1796 Male, age 53, unknown 129.0
2664 Male, age 75, both hemispheres 125.2
1913 Female, age 42, unknown 108.6
1895 Male, age 76, right hemisphere 104.0
1995 Male, age 72, unknown 101.0
2587 Male, age 74, left hemisphere 95.8
1839 Male, age 51, unknown 91.2
Ventral tegmental area
nTPM: 93.4
2218 Male, age 76, both hemispheres 104.7
2410 Female, age 72, unknown 102.7
1942 Male, age 51, unknown 97.8
2223 Female, age 72, unknown 90.0
1915 Female, age 42, unknown 86.4
2021 Male, age 53, unknown 78.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 183

Max nTPM: 40.9
Min nTPM: 4.9
Std nTPM: 5.5
Median nTPM: 14.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 38.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 26.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 25.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 24.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 24.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 23.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.7
Samples: 4

Max nTPM: 73.7
Min nTPM: 55.3
Sample A Female 73.4
Sample B Female 56.5
Sample C Male 73.7
Sample D Male 55.3
Midbrain
nTPM: 74.4
Samples: 4

Max nTPM: 110.6
Min nTPM: 52.3
Sample A Female 71.8
Sample B Female 52.3
Sample C Male 110.6
Sample D Male 62.9
Periaqueductal gray
nTPM: 48.3
Samples: 3

Max nTPM: 53.7
Min nTPM: 43.5
Sample B Female 47.7
Sample C Male 53.7
Sample D Male 43.5
Superior colliculi
nTPM: 69.2
Samples: 4

Max nTPM: 84.4
Min nTPM: 57.2
Sample A Female 64.3
Sample B Female 57.2
Sample C Male 84.4
Sample D Male 70.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 38.3
Min nTPM: 35.3
Sample A Male 38.3
Sample B Male 35.3
Sample C Female 36.0
Sample D Female 37.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
69817751 Antisense, RP_050510_03_F12, Mouse strain C57BL/6J (56 days, male) 9.4
74882787 Antisense, RP_060315_04_G10, Mouse strain C57BL/6J (56 days, male) 8.7

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