MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.4 nTPM
HPA Brain:64.8 nTPM
GTEx:14.4 nTPM
FANTOM5:5.2 Scaled Tags Per Million
Pig:30.5 nTPM
Mouse:21.1 nTPM
Allen mouse:10.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.9
2219 Male, age 76, both hemispheres 86.4
2666 Male, age 74, left hemisphere 56.7
2019 Male, age 18, unknown 54.4
1827 Male, age 72, unknown 49.9
2586 Male, age 75, left hemisphere 45.3
2828 Female, age 72, unknown 44.6
2411 Female, age 72, unknown 44.1
1833 Male, age 53, unknown 38.9
1830 Male, age 51, unknown 35.9
1870 Female, age 42, unknown 32.9
Dorsal raphe nucleus
nTPM: 51.4
2047 Male, age 72, unknown 62.5
1828 Male, age 53, unknown 60.2
2298 Female, age 72, unknown 54.2
2750 Male, age 76, both hemispheres 46.0
2016 Female, age 72, unknown 34.0
Inferior colliculus
nTPM: 50.9
2097 Female, age 72, unknown 54.5
2849 Male, age 72, unknown 53.0
1848 Female, age 42, unknown 49.7
1890 Male, age 53, unknown 46.5
Median raphe nucleus
nTPM: 64.8
2220 Male, age 76, midline 64.8
Periaquaductal grey, anterior
nTPM: 60.8
2502 Female, age 75, unknown 72.0
1795 Male, age 51, unknown 62.1
1947 Male, age 18, unknown 48.4
Periaquaductal grey, dorsal
nTPM: 44.0
1840 Male, age 53, unknown 49.5
2464 Female, age 72, unknown 48.1
2850 Male, age 76, both hemispheres 39.4
1831 Male, age 72, unknown 39.1
Periaquaductal grey, lateral
nTPM: 38.3
2140 Male, age 76, both hemispheres 46.4
2053 Male, age 18, unknown 36.1
2272 Male, age 74, both hemispheres 32.2
Pretectal area
nTPM: 55.6
1816 Male, age 51, unknown 79.2
1944 Female, age 72, unknown 71.1
2007 Male, age 72, unknown 70.6
1817 Female, age 42, unknown 65.8
2667 Female, age 75, unknown 57.4
2224 Female, age 72, unknown 56.0
1815 Male, age 53, unknown 48.7
2316 Male, age 76, right hemisphere 48.0
2407 Male, age 75, both hemispheres 47.6
2825 Male, age 18, unknown 42.1
2273 Male, age 74, both hemispheres 25.1
Red nucleus
nTPM: 32.6
2785 Male, age 18, unknown 52.0
2584 Male, age 75, left hemisphere 42.6
2227 Male, age 72, unknown 35.7
2769 Male, age 72, unknown 34.6
2503 Female, age 72, unknown 32.7
2823 Male, age 76, right hemisphere 32.1
1954 Female, age 42, unknown 31.3
1821 Female, age 72, unknown 30.3
2588 Male, age 74, left hemisphere 29.5
1865 Male, age 51, unknown 26.8
1904 Male, age 53, unknown 25.3
2725 Female, age 75, unknown 18.1
Substantia nigra
nTPM: 49.7
1916 Female, age 42, unknown 80.4
1941 Male, age 53, unknown 72.9
2665 Male, age 74, both hemispheres 60.9
1889 Female, age 72, unknown 58.5
1851 Male, age 51, unknown 52.8
2241 Male, age 72, unknown 44.4
2409 Female, age 72, unknown 39.8
2699 Male, age 18, unknown 39.1
2583 Male, age 75, right hemisphere 25.0
2590 Female, age 75, unknown 23.7
Superior colliculus
nTPM: 58.6
2668 Female, age 75, unknown 136.7
2664 Male, age 75, both hemispheres 70.1
2087 Female, age 72, unknown 68.0
1895 Male, age 76, right hemisphere 56.3
2261 Male, age 18, unknown 54.8
1796 Male, age 53, unknown 54.4
1839 Male, age 51, unknown 47.7
2587 Male, age 74, left hemisphere 39.9
1913 Female, age 42, unknown 30.7
1995 Male, age 72, unknown 27.6
Ventral tegmental area
nTPM: 49.9
2218 Male, age 76, both hemispheres 66.0
2410 Female, age 72, unknown 54.3
1915 Female, age 42, unknown 51.1
1942 Male, age 51, unknown 48.2
2021 Male, age 53, unknown 40.8
2223 Female, age 72, unknown 38.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.4
Samples: 183

Max nTPM: 65.7
Min nTPM: 0.4
Std nTPM: 11.6
Median nTPM: 10.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 65.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 53.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 44.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 39.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 38.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 37.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 36.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 33.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 33.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.2
FF:10158-103A5 76 years, female 5.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 35.1
Min nTPM: 6.9
Sample A Female 35.1
Sample B Female 13.3
Sample C Male 33.4
Sample D Male 6.9
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 53.2
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 18.1
Sample C Male 53.2
Sample D Male 32.9
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 24.6
Min nTPM: 14.4
Sample B Female 15.9
Sample C Male 24.6
Sample D Male 14.4
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 46.6
Min nTPM: 15.2
Sample A Female 29.0
Sample B Female 15.2
Sample C Male 46.6
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 21.9
Min nTPM: 20.4
Sample A Male 21.1
Sample B Male 20.4
Sample C Female 21.9
Sample D Female 21.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
68798903 Antisense, RP_050217_01_E10, Mouse strain C57BL/6J (56 days, male) 10.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo