MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA Brain:22.5 nTPM
GTEx:46.5 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:19.8 nTPM
Allen mouse:2.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.1
2828 Female, age 72, unknown 22.2
2586 Male, age 75, left hemisphere 19.7
2219 Male, age 76, both hemispheres 19.6
1827 Male, age 72, unknown 18.9
2666 Male, age 74, left hemisphere 18.8
2411 Female, age 72, unknown 18.5
1870 Female, age 42, unknown 16.9
2019 Male, age 18, unknown 15.8
1833 Male, age 53, unknown 15.1
1830 Male, age 51, unknown 15.0
Dorsal raphe nucleus
nTPM: 13.5
2750 Male, age 76, both hemispheres 15.4
2298 Female, age 72, unknown 15.0
1828 Male, age 53, unknown 14.3
2047 Male, age 72, unknown 14.1
2016 Female, age 72, unknown 8.5
Inferior colliculus
nTPM: 15.1
2849 Male, age 72, unknown 18.5
1848 Female, age 42, unknown 16.7
1890 Male, age 53, unknown 13.4
2097 Female, age 72, unknown 11.6
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 14.9
1795 Male, age 51, unknown 20.2
2502 Female, age 75, unknown 14.6
1947 Male, age 18, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 13.9
1840 Male, age 53, unknown 17.3
2464 Female, age 72, unknown 13.6
2850 Male, age 76, both hemispheres 12.8
1831 Male, age 72, unknown 11.9
Periaquaductal grey, lateral
nTPM: 12.9
2053 Male, age 18, unknown 16.3
2140 Male, age 76, both hemispheres 11.8
2272 Male, age 74, both hemispheres 10.7
Pretectal area
nTPM: 17.5
1944 Female, age 72, unknown 23.0
2667 Female, age 75, unknown 22.0
1817 Female, age 42, unknown 21.6
1816 Male, age 51, unknown 21.2
2007 Male, age 72, unknown 20.3
2825 Male, age 18, unknown 17.6
1815 Male, age 53, unknown 16.9
2224 Female, age 72, unknown 14.1
2407 Male, age 75, both hemispheres 13.9
2273 Male, age 74, both hemispheres 11.6
2316 Male, age 76, right hemisphere 10.3
Red nucleus
nTPM: 17.2
2588 Male, age 74, left hemisphere 21.1
2503 Female, age 72, unknown 20.8
2725 Female, age 75, unknown 20.5
2769 Male, age 72, unknown 19.1
2227 Male, age 72, unknown 18.9
2785 Male, age 18, unknown 17.3
2584 Male, age 75, left hemisphere 16.8
1954 Female, age 42, unknown 16.0
1904 Male, age 53, unknown 15.3
1865 Male, age 51, unknown 14.8
1821 Female, age 72, unknown 13.1
2823 Male, age 76, right hemisphere 12.6
Substantia nigra
nTPM: 17.8
1916 Female, age 42, unknown 25.8
2665 Male, age 74, both hemispheres 20.8
2699 Male, age 18, unknown 20.8
1889 Female, age 72, unknown 19.6
2409 Female, age 72, unknown 17.9
1941 Male, age 53, unknown 17.1
2583 Male, age 75, right hemisphere 16.8
1851 Male, age 51, unknown 16.5
2590 Female, age 75, unknown 12.2
2241 Male, age 72, unknown 10.2
Superior colliculus
nTPM: 16.0
1796 Male, age 53, unknown 19.6
2087 Female, age 72, unknown 19.2
1895 Male, age 76, right hemisphere 16.9
2261 Male, age 18, unknown 15.8
2664 Male, age 75, both hemispheres 15.5
2587 Male, age 74, left hemisphere 15.1
1839 Male, age 51, unknown 15.0
1913 Female, age 42, unknown 14.6
1995 Male, age 72, unknown 14.6
2668 Female, age 75, unknown 14.2
Ventral tegmental area
nTPM: 17.9
1915 Female, age 42, unknown 20.3
2218 Male, age 76, both hemispheres 20.3
2410 Female, age 72, unknown 17.8
2223 Female, age 72, unknown 17.7
2021 Male, age 53, unknown 15.7
1942 Male, age 51, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.5
Samples: 183

Max nTPM: 126.7
Min nTPM: 15.8
Std nTPM: 15.3
Median nTPM: 44.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 89.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 84.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 83.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 82.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 78.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 78.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 72.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 72.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 71.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 71.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 44.7
Min nTPM: 26.6
Sample A Female 42.7
Sample B Female 27.4
Sample C Male 44.7
Sample D Male 26.6
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 31.3
Sample A Female 31.9
Sample B Female 35.3
Sample C Male 31.3
Sample D Male 37.3
Periaqueductal gray
nTPM: 31.1
Samples: 3

Max nTPM: 36.6
Min nTPM: 28.0
Sample B Female 28.0
Sample C Male 36.6
Sample D Male 28.7
Superior colliculi
nTPM: 36.6
Samples: 4

Max nTPM: 47.1
Min nTPM: 26.4
Sample A Female 47.1
Sample B Female 26.4
Sample C Male 32.1
Sample D Male 40.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 24.4
Min nTPM: 16.3
Sample A Male 24.4
Sample B Male 18.8
Sample C Female 16.3
Sample D Female 19.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69170270 Antisense, RP_050329_01_A06, Mouse strain C57BL/6J (56 days, male) 3.5
80472079 Antisense, RP_070219_01_C08, Mouse strain C57BL/6J (56 days, male) 0.7

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