BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:949.2 nTPM
HPA Brain:442.3 nTPM
GTEx:949.2 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Mouse:201.0 nTPM
Rat:0.8 nTPM
Pig:112.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 442.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 394.7
2586 Male, age 75, left hemisphere 543.1
2666 Male, age 74, left hemisphere 422.1
2828 Female, age 72, unknown 404.2
2411 Female, age 72, unknown 396.4
2219 Male, age 76, both hemispheres 392.3
1870 Female, age 42, unknown 374.8
1833 Male, age 53, unknown 366.6
2019 Male, age 18, unknown 356.1
1830 Male, age 51, unknown 346.7
1827 Male, age 72, unknown 344.2
Dorsal raphe nucleus
nTPM: 405.0
2298 Female, age 72, unknown 463.6
1828 Male, age 53, unknown 398.9
2016 Female, age 72, unknown 397.6
2750 Male, age 76, both hemispheres 394.6
2047 Male, age 72, unknown 370.4
Inferior colliculus
nTPM: 369.4
2849 Male, age 72, unknown 392.5
1890 Male, age 53, unknown 390.0
1848 Female, age 42, unknown 358.8
2097 Female, age 72, unknown 336.4
Median raphe nucleus
nTPM: 388.1
2220 Male, age 76, midline 388.1
Periaquaductal grey, anterior
nTPM: 425.5
2502 Female, age 75, unknown 495.8
1795 Male, age 51, unknown 416.5
1947 Male, age 18, unknown 364.3
Periaquaductal grey, dorsal
nTPM: 380.6
1840 Male, age 53, unknown 397.5
1831 Male, age 72, unknown 396.3
2464 Female, age 72, unknown 373.4
2850 Male, age 76, both hemispheres 355.1
Periaquaductal grey, lateral
nTPM: 356.1
2272 Male, age 74, both hemispheres 365.9
2053 Male, age 18, unknown 362.2
2140 Male, age 76, both hemispheres 340.3
Pretectal area
nTPM: 364.1
2316 Male, age 76, right hemisphere 411.1
1817 Female, age 42, unknown 397.6
2007 Male, age 72, unknown 394.7
2224 Female, age 72, unknown 389.0
1815 Male, age 53, unknown 376.6
1816 Male, age 51, unknown 372.2
2825 Male, age 18, unknown 354.1
2407 Male, age 75, both hemispheres 334.6
2273 Male, age 74, both hemispheres 333.2
2667 Female, age 75, unknown 324.6
1944 Female, age 72, unknown 316.9
Red nucleus
nTPM: 410.3
2503 Female, age 72, unknown 516.5
2769 Male, age 72, unknown 451.3
2584 Male, age 75, left hemisphere 449.2
1865 Male, age 51, unknown 422.7
2227 Male, age 72, unknown 419.7
2725 Female, age 75, unknown 411.0
1904 Male, age 53, unknown 410.1
1821 Female, age 72, unknown 408.3
2785 Male, age 18, unknown 400.1
2588 Male, age 74, left hemisphere 393.8
1954 Female, age 42, unknown 332.7
2823 Male, age 76, right hemisphere 308.6
Substantia nigra
nTPM: 442.3
2699 Male, age 18, unknown 609.4
1851 Male, age 51, unknown 576.6
2665 Male, age 74, both hemispheres 499.2
1916 Female, age 42, unknown 470.4
2590 Female, age 75, unknown 413.9
2409 Female, age 72, unknown 407.6
2583 Male, age 75, right hemisphere 372.8
1941 Male, age 53, unknown 368.8
1889 Female, age 72, unknown 365.1
2241 Male, age 72, unknown 339.6
Superior colliculus
nTPM: 408.7
2587 Male, age 74, left hemisphere 466.0
1995 Male, age 72, unknown 465.3
1913 Female, age 42, unknown 454.8
1796 Male, age 53, unknown 442.7
2664 Male, age 75, both hemispheres 435.5
2668 Female, age 75, unknown 400.8
1839 Male, age 51, unknown 379.5
2261 Male, age 18, unknown 376.7
2087 Female, age 72, unknown 348.1
1895 Male, age 76, right hemisphere 317.9
Ventral tegmental area
nTPM: 439.3
1915 Female, age 42, unknown 507.9
2410 Female, age 72, unknown 460.8
2223 Female, age 72, unknown 451.4
2021 Male, age 53, unknown 440.3
2218 Male, age 76, both hemispheres 397.9
1942 Male, age 51, unknown 377.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 949.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 949.2
Samples: 183

Max nTPM: 2195.5
Min nTPM: 352.1
Std nTPM: 331.6
Median nTPM: 888.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2195.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2135.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2049.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1802.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1691.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1607.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1575.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1574.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1570.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1546.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1542.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 112.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 111.6
Samples: 3

Max nTPM: 131.1
Min nTPM: 99.8
Sample A Female 131.1
Sample B Female 104.0
Sample C Male 99.8
Midbrain
nTPM: 93.4
Samples: 3

Max nTPM: 109.4
Min nTPM: 85.0
Sample B Female 109.4
Sample C Male 85.8
Sample D Male 85.0
Periaqueductal gray
nTPM: 88.8
Samples: 3

Max nTPM: 97.7
Min nTPM: 80.7
Sample B Female 88.1
Sample C Male 97.7
Sample D Male 80.7
Superior colliculi
nTPM: 112.6
Samples: 4

Max nTPM: 140.2
Min nTPM: 96.3
Sample A Female 140.2
Sample B Female 115.5
Sample C Male 96.3
Sample D Male 98.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 201.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 201.0
Samples: 4

Max nTPM: 228.9
Min nTPM: 140.0
Sample A 228.9
Sample B 140.0
Sample C 215.4
Sample D 219.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 0.8
Rat sample Sample description nTPM
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.4
Sample A 1.5
Sample A 1.0
Sample A 0.5
Sample A 0.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo