MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.4 nTPM
HPA Brain:216.4 nTPM
GTEx:92.4 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:287.0 nTPM
Mouse:291.2 nTPM
Allen mouse:16.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 216.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 159.2
2586 Male, age 75, left hemisphere 194.7
1827 Male, age 72, unknown 180.1
2219 Male, age 76, both hemispheres 173.9
2666 Male, age 74, left hemisphere 171.5
2019 Male, age 18, unknown 170.6
2411 Female, age 72, unknown 170.5
1870 Female, age 42, unknown 151.4
1833 Male, age 53, unknown 134.7
2828 Female, age 72, unknown 127.9
1830 Male, age 51, unknown 116.7
Dorsal raphe nucleus
nTPM: 164.8
2298 Female, age 72, unknown 231.5
2047 Male, age 72, unknown 176.8
1828 Male, age 53, unknown 157.0
2750 Male, age 76, both hemispheres 141.9
2016 Female, age 72, unknown 116.8
Inferior colliculus
nTPM: 161.0
2097 Female, age 72, unknown 194.1
2849 Male, age 72, unknown 162.3
1848 Female, age 42, unknown 158.1
1890 Male, age 53, unknown 129.5
Median raphe nucleus
nTPM: 191.7
2220 Male, age 76, midline 191.7
Periaquaductal grey, anterior
nTPM: 194.7
1795 Male, age 51, unknown 211.2
2502 Female, age 75, unknown 190.0
1947 Male, age 18, unknown 183.1
Periaquaductal grey, dorsal
nTPM: 156.2
1840 Male, age 53, unknown 183.8
2850 Male, age 76, both hemispheres 158.7
2464 Female, age 72, unknown 147.5
1831 Male, age 72, unknown 134.6
Periaquaductal grey, lateral
nTPM: 146.1
2140 Male, age 76, both hemispheres 151.2
2272 Male, age 74, both hemispheres 149.1
2053 Male, age 18, unknown 137.9
Pretectal area
nTPM: 216.4
1816 Male, age 51, unknown 307.6
2007 Male, age 72, unknown 294.2
1944 Female, age 72, unknown 272.4
1817 Female, age 42, unknown 261.2
2224 Female, age 72, unknown 239.2
2667 Female, age 75, unknown 236.5
1815 Male, age 53, unknown 220.1
2825 Male, age 18, unknown 164.7
2273 Male, age 74, both hemispheres 128.6
2407 Male, age 75, both hemispheres 128.0
2316 Male, age 76, right hemisphere 127.3
Red nucleus
nTPM: 105.9
2785 Male, age 18, unknown 172.7
2584 Male, age 75, left hemisphere 127.7
1821 Female, age 72, unknown 109.6
2769 Male, age 72, unknown 107.9
1954 Female, age 42, unknown 107.8
2227 Male, age 72, unknown 102.3
2503 Female, age 72, unknown 98.2
2588 Male, age 74, left hemisphere 94.0
1904 Male, age 53, unknown 92.7
1865 Male, age 51, unknown 88.3
2823 Male, age 76, right hemisphere 86.8
2725 Female, age 75, unknown 83.0
Substantia nigra
nTPM: 146.0
1889 Female, age 72, unknown 217.5
2665 Male, age 74, both hemispheres 182.7
1941 Male, age 53, unknown 175.2
1916 Female, age 42, unknown 170.5
2590 Female, age 75, unknown 137.8
1851 Male, age 51, unknown 136.2
2241 Male, age 72, unknown 123.5
2583 Male, age 75, right hemisphere 121.2
2409 Female, age 72, unknown 103.8
2699 Male, age 18, unknown 91.9
Superior colliculus
nTPM: 163.7
2087 Female, age 72, unknown 205.9
2261 Male, age 18, unknown 192.5
1796 Male, age 53, unknown 185.2
2668 Female, age 75, unknown 183.5
2664 Male, age 75, both hemispheres 171.1
1895 Male, age 76, right hemisphere 166.1
1839 Male, age 51, unknown 160.8
2587 Male, age 74, left hemisphere 135.1
1913 Female, age 42, unknown 124.6
1995 Male, age 72, unknown 112.8
Ventral tegmental area
nTPM: 156.1
2218 Male, age 76, both hemispheres 180.4
1915 Female, age 42, unknown 161.4
1942 Male, age 51, unknown 157.3
2410 Female, age 72, unknown 151.4
2223 Female, age 72, unknown 144.7
2021 Male, age 53, unknown 141.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 92.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.4
Samples: 183

Max nTPM: 386.9
Min nTPM: 9.0
Std nTPM: 62.3
Median nTPM: 71.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 386.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 306.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 275.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 241.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 240.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 224.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 220.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 218.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 213.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 200.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 196.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 287.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 198.6
Samples: 4

Max nTPM: 303.6
Min nTPM: 69.3
Sample A Female 303.6
Sample B Female 131.9
Sample C Male 289.4
Sample D Male 69.3
Midbrain
nTPM: 266.2
Samples: 4

Max nTPM: 485.0
Min nTPM: 80.7
Sample A Female 80.7
Sample B Female 158.8
Sample C Male 485.0
Sample D Male 340.2
Periaqueductal gray
nTPM: 187.7
Samples: 3

Max nTPM: 249.7
Min nTPM: 149.1
Sample B Female 149.1
Sample C Male 249.7
Sample D Male 164.3
Superior colliculi
nTPM: 287.0
Samples: 4

Max nTPM: 395.3
Min nTPM: 160.6
Sample A Female 313.5
Sample B Female 160.6
Sample C Male 395.3
Sample D Male 278.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 291.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 291.2
Samples: 4

Max nTPM: 296.8
Min nTPM: 288.8
Sample A Male 290.0
Sample B Male 288.8
Sample C Female 289.3
Sample D Female 296.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.9
68843883 Antisense, RP_050217_02_E01, Mouse strain C57BL/6J (56 days, male) 16.9

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