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  • FKBP8
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:354.9 nTPM
HPA Brain:390.8 nTPM
GTEx:354.9 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:207.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

390.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 380.4
2565 Male, age 75, midline 505.2
2194 Female, age 79, both hemispheres 403.7
2816 Male, age 47, midline 374.1
1981 Female, age 72, midline 330.1
2048 Male, age 55, midline 289.0
Cervical spinal cord, dorsal horn
nTPM: 329.6
1877 Male, age 55, unknown 371.9
2297 Male, age 75, both hemispheres 370.9
2173 Female, age 72, unknown 327.7
2721 Male, age 90, both hemispheres 308.4
2296 Male, age 66, both hemispheres 306.7
2069 Male, age 47, both hemispheres 291.7
Cervical spinal cord, ventral horn
nTPM: 390.8
2480 Male, age 75, both hemispheres 460.7
2820 Female, age 79, both hemispheres 452.6
2809 Male, age 90, both hemispheres 392.1
2068 Male, age 55, unknown 390.0
2295 Male, age 66, both hemispheres 379.9
2098 Female, age 72, unknown 269.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

354.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 354.9
Samples: 204

Max nTPM: 710.2
Min nTPM: 183.3
Std nTPM: 87.3
Median nTPM: 345.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 710.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 705.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 680.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 619.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 595.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 589.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 577.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 534.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 529.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 524.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 510.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 501.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 491.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 489.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 488.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 471.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 469.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 468.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 464.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 462.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 457.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 456.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 455.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 453.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 449.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 444.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 443.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 436.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 433.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 431.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 429.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 424.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 420.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 419.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 415.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 415.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 414.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 413.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 411.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 407.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 406.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 406.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 405.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 403.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 402.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 402.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 400.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 400.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 399.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 398.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 398.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 395.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 395.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 393.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 392.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 391.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 391.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 391.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 391.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 386.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 381.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 380.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 378.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 377.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 377.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 377.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 374.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 372.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 370.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 369.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 369.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 368.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 368.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 366.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 366.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 366.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 366.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 365.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 362.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 362.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 361.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 360.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 359.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 359.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 359.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 359.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 358.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 357.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 355.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 354.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 353.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 352.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 351.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 350.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 350.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 350.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 350.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 349.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 348.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 348.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 348.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 346.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 345.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 344.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 344.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 342.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 342.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 341.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 341.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 339.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 339.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 335.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 333.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 333.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 332.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 331.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 330.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 328.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 328.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 327.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 327.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 326.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 325.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 325.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 324.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 324.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 320.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 320.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 319.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 319.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 317.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 317.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 316.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 315.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 315.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 314.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 312.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 312.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 312.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 310.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 310.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 307.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 307.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 306.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 303.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 302.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 300.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 298.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 297.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 296.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 296.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 296.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 296.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 295.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 295.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 293.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 291.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 291.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 290.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 289.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 289.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 289.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 286.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 286.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 284.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 283.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 282.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 282.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 280.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 279.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 276.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 273.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 273.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 273.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 271.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 269.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 269.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 268.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 267.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 267.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 265.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 265.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 264.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 261.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 259.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 256.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 256.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 255.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 255.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 254.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 252.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 250.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 248.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 238.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 236.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 234.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 233.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 229.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 217.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 215.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 212.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 209.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 200.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 183.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 125.4
FF:10181-103D1 60 years, female 150.0
FF:10159-103A6 76 years, female 100.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 207.4
Samples: 4

Max nTPM: 224.5
Min nTPM: 184.3
Sample A Female 224.5
Sample B Female 184.3
Sample C Male 206.8
Sample D Male 213.9
Ventral spinal cord
nTPM: 200.6
Samples: 4

Max nTPM: 206.1
Min nTPM: 193.1
Sample A Female 193.1
Sample B Female 199.2
Sample C Male 206.1
Sample D Male 203.9

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