MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:19.4 nTPM
GTEx:14.5 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:5.4 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2586 Male, age 75, left hemisphere 22.9
2828 Female, age 72, unknown 20.1
2411 Female, age 72, unknown 17.8
1827 Male, age 72, unknown 16.4
2219 Male, age 76, both hemispheres 15.7
1870 Female, age 42, unknown 15.3
2019 Male, age 18, unknown 15.1
1833 Male, age 53, unknown 14.6
1830 Male, age 51, unknown 13.9
2666 Male, age 74, left hemisphere 13.5
Dorsal raphe nucleus
nTPM: 18.9
2298 Female, age 72, unknown 23.1
2047 Male, age 72, unknown 20.0
2016 Female, age 72, unknown 18.6
1828 Male, age 53, unknown 17.0
2750 Male, age 76, both hemispheres 16.0
Inferior colliculus
nTPM: 15.1
1848 Female, age 42, unknown 15.8
2097 Female, age 72, unknown 15.8
1890 Male, age 53, unknown 14.7
2849 Male, age 72, unknown 14.2
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Periaquaductal grey, anterior
nTPM: 19.4
1795 Male, age 51, unknown 20.2
2502 Female, age 75, unknown 19.4
1947 Male, age 18, unknown 18.7
Periaquaductal grey, dorsal
nTPM: 15.9
1840 Male, age 53, unknown 17.6
2464 Female, age 72, unknown 16.5
1831 Male, age 72, unknown 15.6
2850 Male, age 76, both hemispheres 13.7
Periaquaductal grey, lateral
nTPM: 17.6
2272 Male, age 74, both hemispheres 18.1
2140 Male, age 76, both hemispheres 18.0
2053 Male, age 18, unknown 16.9
Pretectal area
nTPM: 16.9
2273 Male, age 74, both hemispheres 19.7
2224 Female, age 72, unknown 18.4
1816 Male, age 51, unknown 17.6
2007 Male, age 72, unknown 17.4
1815 Male, age 53, unknown 17.0
2316 Male, age 76, right hemisphere 16.8
2825 Male, age 18, unknown 16.5
1817 Female, age 42, unknown 16.1
2407 Male, age 75, both hemispheres 15.8
1944 Female, age 72, unknown 15.5
2667 Female, age 75, unknown 15.3
Red nucleus
nTPM: 16.0
2503 Female, age 72, unknown 18.2
2725 Female, age 75, unknown 18.2
2769 Male, age 72, unknown 18.1
2227 Male, age 72, unknown 17.4
2584 Male, age 75, left hemisphere 16.2
1904 Male, age 53, unknown 15.7
2785 Male, age 18, unknown 15.7
1954 Female, age 42, unknown 15.4
1821 Female, age 72, unknown 14.8
2588 Male, age 74, left hemisphere 14.4
1865 Male, age 51, unknown 14.2
2823 Male, age 76, right hemisphere 13.5
Substantia nigra
nTPM: 15.0
1851 Male, age 51, unknown 17.4
1916 Female, age 42, unknown 17.3
2583 Male, age 75, right hemisphere 17.3
2590 Female, age 75, unknown 17.1
2699 Male, age 18, unknown 14.9
2409 Female, age 72, unknown 14.7
1941 Male, age 53, unknown 13.9
1889 Female, age 72, unknown 13.5
2665 Male, age 74, both hemispheres 12.5
2241 Male, age 72, unknown 11.9
Superior colliculus
nTPM: 16.7
2664 Male, age 75, both hemispheres 20.4
2261 Male, age 18, unknown 20.2
1796 Male, age 53, unknown 19.7
2087 Female, age 72, unknown 16.9
1839 Male, age 51, unknown 16.8
1995 Male, age 72, unknown 16.2
1913 Female, age 42, unknown 15.0
2587 Male, age 74, left hemisphere 14.2
1895 Male, age 76, right hemisphere 13.9
2668 Female, age 75, unknown 13.9
Ventral tegmental area
nTPM: 16.0
1915 Female, age 42, unknown 17.9
2410 Female, age 72, unknown 16.5
2021 Male, age 53, unknown 16.4
1942 Male, age 51, unknown 16.3
2218 Male, age 76, both hemispheres 14.4
2223 Female, age 72, unknown 14.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 183

Max nTPM: 26.4
Min nTPM: 6.1
Std nTPM: 3.6
Median nTPM: 13.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 26.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 25.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 25.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 25.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 23.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 23.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 22.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 21.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.0
FF:10158-103A5 76 years, female 11.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 4.6
Sample C Male 4.1
Sample D Male 5.1
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.2
Sample A Female 5.4
Sample B Female 4.3
Sample C Male 4.2
Sample D Male 4.3
Periaqueductal gray
nTPM: 4.2
Samples: 3

Max nTPM: 4.4
Min nTPM: 3.8
Sample B Female 4.3
Sample C Male 4.4
Sample D Male 3.8
Superior colliculi
nTPM: 5.1
Samples: 4

Max nTPM: 7.3
Min nTPM: 3.9
Sample A Female 4.4
Sample B Female 7.3
Sample C Male 3.9
Sample D Male 4.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 5.7
Min nTPM: 5.1
Sample A Male 5.5
Sample B Male 5.1
Sample C Female 5.4
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69514512 Antisense, RP_050419_03_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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