MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:440.0 nTPM
HPA Brain:274.2 nTPM
GTEx:440.0 nTPM
FANTOM5:120.9 Scaled Tags Per Million
Pig:186.9 nTPM
Mouse:264.1 nTPM
Allen mouse:20.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 274.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 213.3
2411 Female, age 72, unknown 264.7
2019 Male, age 18, unknown 254.9
2828 Female, age 72, unknown 236.0
1827 Male, age 72, unknown 230.7
1870 Female, age 42, unknown 210.0
1833 Male, age 53, unknown 207.1
2219 Male, age 76, both hemispheres 202.4
1830 Male, age 51, unknown 188.6
2586 Male, age 75, left hemisphere 179.2
2666 Male, age 74, left hemisphere 159.3
Dorsal raphe nucleus
nTPM: 274.2
2298 Female, age 72, unknown 383.7
2047 Male, age 72, unknown 277.5
1828 Male, age 53, unknown 245.0
2016 Female, age 72, unknown 235.2
2750 Male, age 76, both hemispheres 229.2
Inferior colliculus
nTPM: 242.6
2097 Female, age 72, unknown 322.3
1890 Male, age 53, unknown 236.5
1848 Female, age 42, unknown 225.4
2849 Male, age 72, unknown 186.1
Median raphe nucleus
nTPM: 238.1
2220 Male, age 76, midline 238.1
Periaquaductal grey, anterior
nTPM: 245.6
1795 Male, age 51, unknown 255.1
2502 Female, age 75, unknown 254.3
1947 Male, age 18, unknown 227.4
Periaquaductal grey, dorsal
nTPM: 211.8
1840 Male, age 53, unknown 229.9
2464 Female, age 72, unknown 222.0
2850 Male, age 76, both hemispheres 215.7
1831 Male, age 72, unknown 179.5
Periaquaductal grey, lateral
nTPM: 227.8
2272 Male, age 74, both hemispheres 257.9
2140 Male, age 76, both hemispheres 225.4
2053 Male, age 18, unknown 200.1
Pretectal area
nTPM: 253.8
2273 Male, age 74, both hemispheres 299.9
2007 Male, age 72, unknown 292.2
1817 Female, age 42, unknown 285.2
2224 Female, age 72, unknown 272.6
1816 Male, age 51, unknown 266.4
2667 Female, age 75, unknown 255.9
1944 Female, age 72, unknown 251.5
1815 Male, age 53, unknown 240.9
2316 Male, age 76, right hemisphere 237.0
2825 Male, age 18, unknown 202.1
2407 Male, age 75, both hemispheres 188.1
Red nucleus
nTPM: 227.1
2503 Female, age 72, unknown 271.2
1821 Female, age 72, unknown 269.2
1954 Female, age 42, unknown 241.2
2785 Male, age 18, unknown 241.1
2769 Male, age 72, unknown 238.9
2227 Male, age 72, unknown 237.1
1904 Male, age 53, unknown 233.0
2725 Female, age 75, unknown 224.4
1865 Male, age 51, unknown 221.9
2823 Male, age 76, right hemisphere 219.6
2588 Male, age 74, left hemisphere 178.0
2584 Male, age 75, left hemisphere 149.0
Substantia nigra
nTPM: 253.8
1916 Female, age 42, unknown 369.9
1851 Male, age 51, unknown 298.8
2241 Male, age 72, unknown 271.4
1889 Female, age 72, unknown 263.4
1941 Male, age 53, unknown 259.6
2699 Male, age 18, unknown 247.4
2409 Female, age 72, unknown 229.6
2590 Female, age 75, unknown 227.4
2583 Male, age 75, right hemisphere 186.9
2665 Male, age 74, both hemispheres 183.7
Superior colliculus
nTPM: 221.9
2261 Male, age 18, unknown 259.8
1796 Male, age 53, unknown 253.9
2087 Female, age 72, unknown 246.5
2668 Female, age 75, unknown 228.8
2587 Male, age 74, left hemisphere 221.4
1913 Female, age 42, unknown 207.2
1995 Male, age 72, unknown 205.7
1895 Male, age 76, right hemisphere 201.0
1839 Male, age 51, unknown 199.9
2664 Male, age 75, both hemispheres 194.7
Ventral tegmental area
nTPM: 257.4
2410 Female, age 72, unknown 309.8
1915 Female, age 42, unknown 279.0
2218 Male, age 76, both hemispheres 266.9
1942 Male, age 51, unknown 241.1
2223 Female, age 72, unknown 227.0
2021 Male, age 53, unknown 220.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 440.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 440.0
Samples: 183

Max nTPM: 1038.3
Min nTPM: 204.4
Std nTPM: 111.0
Median nTPM: 429.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1038.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 790.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 780.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 756.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 667.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 662.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 658.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 649.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 646.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 615.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 601.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.9
FF:10158-103A5 76 years, female 120.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 186.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 152.6
Samples: 4

Max nTPM: 204.4
Min nTPM: 112.9
Sample A Female 204.4
Sample B Female 149.4
Sample C Male 143.8
Sample D Male 112.9
Midbrain
nTPM: 162.1
Samples: 4

Max nTPM: 191.2
Min nTPM: 138.5
Sample A Female 191.2
Sample B Female 155.3
Sample C Male 163.2
Sample D Male 138.5
Periaqueductal gray
nTPM: 131.0
Samples: 3

Max nTPM: 144.2
Min nTPM: 120.8
Sample B Female 128.1
Sample C Male 144.2
Sample D Male 120.8
Superior colliculi
nTPM: 186.9
Samples: 4

Max nTPM: 215.7
Min nTPM: 143.7
Sample A Female 200.5
Sample B Female 215.7
Sample C Male 187.7
Sample D Male 143.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 264.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 264.1
Samples: 4

Max nTPM: 290.5
Min nTPM: 232.5
Sample A Male 290.5
Sample B Male 263.3
Sample C Female 232.5
Sample D Female 270.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
69262287 Antisense, RP_050303_01_F04, Mouse strain C57BL/6J (56 days, male) 22.2
74272036 Antisense, RP_060202_01_A03, Mouse strain C57BL/6J (56 days, male) 18.1

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