On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
26.8
nTPM
HPA Brain:
36.0
nTPM
GTEx:
26.8
nTPM
FANTOM5:
103.1
Scaled Tags Per Million
Mouse:
35.6
nTPM
Rat:
56.1
nTPM
Pig:
104.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 31.8
2666
Male, age 74, left hemisphere
37.2
2586
Male, age 75, left hemisphere
36.6
1827
Male, age 72, unknown
32.5
2828
Female, age 72, unknown
32.2
2019
Male, age 18, unknown
31.5
1870
Female, age 42, unknown
31.0
1833
Male, age 53, unknown
30.9
2411
Female, age 72, unknown
29.4
1830
Male, age 51, unknown
28.8
2219
Male, age 76, both hemispheres
27.6
Dorsal raphe nucleus nTPM: 30.7
1828
Male, age 53, unknown
33.7
2047
Male, age 72, unknown
30.6
2750
Male, age 76, both hemispheres
30.6
2298
Female, age 72, unknown
29.7
2016
Female, age 72, unknown
28.9
Inferior colliculus nTPM: 29.1
2849
Male, age 72, unknown
31.9
1890
Male, age 53, unknown
28.6
1848
Female, age 42, unknown
28.4
2097
Female, age 72, unknown
27.4
Median raphe nucleus nTPM: 30.8
2220
Male, age 76, midline
30.8
Periaquaductal grey, anterior nTPM: 30.7
2502
Female, age 75, unknown
31.0
1795
Male, age 51, unknown
30.5
1947
Male, age 18, unknown
30.5
Periaquaductal grey, dorsal nTPM: 29.0
2850
Male, age 76, both hemispheres
30.2
1840
Male, age 53, unknown
29.3
1831
Male, age 72, unknown
28.6
2464
Female, age 72, unknown
27.8
Periaquaductal grey, lateral nTPM: 27.9
2140
Male, age 76, both hemispheres
30.2
2053
Male, age 18, unknown
28.0
2272
Male, age 74, both hemispheres
25.7
Pretectal area nTPM: 30.5
1816
Male, age 51, unknown
35.6
2007
Male, age 72, unknown
34.3
1817
Female, age 42, unknown
32.4
1815
Male, age 53, unknown
31.6
2825
Male, age 18, unknown
31.2
2407
Male, age 75, both hemispheres
30.7
2316
Male, age 76, right hemisphere
29.2
1944
Female, age 72, unknown
28.2
2273
Male, age 74, both hemispheres
28.1
2667
Female, age 75, unknown
27.4
2224
Female, age 72, unknown
26.7
Red nucleus nTPM: 31.4
2584
Male, age 75, left hemisphere
35.1
1821
Female, age 72, unknown
34.7
2725
Female, age 75, unknown
34.3
2227
Male, age 72, unknown
33.5
2588
Male, age 74, left hemisphere
31.3
2769
Male, age 72, unknown
30.9
1865
Male, age 51, unknown
30.4
2503
Female, age 72, unknown
30.3
2823
Male, age 76, right hemisphere
30.1
2785
Male, age 18, unknown
29.1
1954
Female, age 42, unknown
28.8
1904
Male, age 53, unknown
28.7
Substantia nigra nTPM: 36.0
2409
Female, age 72, unknown
50.4
1916
Female, age 42, unknown
40.5
1851
Male, age 51, unknown
36.5
1941
Male, age 53, unknown
36.2
2699
Male, age 18, unknown
36.1
2665
Male, age 74, both hemispheres
36.0
2583
Male, age 75, right hemisphere
33.1
2590
Female, age 75, unknown
31.2
1889
Female, age 72, unknown
30.7
2241
Male, age 72, unknown
29.3
Superior colliculus nTPM: 31.0
2668
Female, age 75, unknown
35.3
2261
Male, age 18, unknown
32.2
2664
Male, age 75, both hemispheres
32.2
2087
Female, age 72, unknown
31.8
2587
Male, age 74, left hemisphere
31.5
1839
Male, age 51, unknown
31.4
1796
Male, age 53, unknown
29.9
1913
Female, age 42, unknown
29.5
1995
Male, age 72, unknown
28.4
1895
Male, age 76, right hemisphere
27.4
Ventral tegmental area nTPM: 30.7
1915
Female, age 42, unknown
34.1
2218
Male, age 76, both hemispheres
31.9
2021
Male, age 53, unknown
30.5
2410
Female, age 72, unknown
30.5
2223
Female, age 72, unknown
28.7
1942
Male, age 51, unknown
28.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 26.8
Samples: 183
Max nTPM: 38.6
Min nTPM: 15.8
Std nTPM: 4.0
Median nTPM: 27.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
38.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
36.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
36.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
35.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
35.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
34.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
34.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
34.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
34.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
33.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
33.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
32.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
32.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
32.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
32.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
32.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
32.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
32.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
32.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
31.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
31.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
31.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
31.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
31.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
30.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
30.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
30.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
30.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
30.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
30.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
30.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
30.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
30.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
30.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
30.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
30.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
29.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
29.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
29.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
29.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
29.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
29.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
29.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
29.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
28.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
28.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
28.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
28.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
28.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
28.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
28.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
28.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
28.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
28.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
28.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
28.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
28.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
28.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
28.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
28.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
28.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
28.0
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
28.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
28.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
27.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
27.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
27.8
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
27.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
27.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
27.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
27.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
27.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
27.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
27.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
27.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
27.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
27.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
27.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
27.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
27.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
27.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
27.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
27.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
27.2
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
27.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
27.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
27.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
27.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
27.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
27.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
27.0
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
27.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
26.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
26.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
26.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
26.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
26.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
26.6
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
26.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
26.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
26.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
26.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
26.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
26.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
26.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
26.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
26.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
26.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
26.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
26.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
26.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
26.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
25.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
25.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
25.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
25.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
25.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
25.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
25.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
25.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
25.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
25.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
25.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
25.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
25.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
25.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
25.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
25.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
25.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
24.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
24.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
24.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
24.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
24.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
24.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
24.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
24.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
24.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
23.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
23.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
23.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
23.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
23.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
23.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
23.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
23.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
23.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
23.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
23.2
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
23.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
23.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
22.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
22.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
22.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
22.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
22.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
22.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
22.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
22.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
22.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
22.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
21.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
21.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
21.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
21.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
21.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
21.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
20.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
20.0
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
19.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
19.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
19.6
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
19.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
19.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
19.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
19.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
18.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
17.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
15.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 99.6
Samples: 3
Max nTPM: 110.7
Min nTPM: 79.3
Sample A
Female
110.7
Sample B
Female
79.3
Sample C
Male
108.7
Midbrain nTPM: 104.7
Samples: 3
Max nTPM: 107.2
Min nTPM: 102.5
Sample B
Female
107.2
Sample C
Male
104.3
Sample D
Male
102.5
Periaqueductal gray nTPM: 91.3
Samples: 3
Max nTPM: 108.5
Min nTPM: 80.9
Sample B
Female
84.5
Sample C
Male
108.5
Sample D
Male
80.9
Superior colliculi nTPM: 104.7
Samples: 4
Max nTPM: 120.2
Min nTPM: 81.2
Sample A
Female
120.2
Sample B
Female
81.2
Sample C
Male
97.8
Sample D
Male
119.7
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 35.6
Samples: 4
Max nTPM: 37.6
Min nTPM: 32.4
Sample A
32.4
Sample B
36.3
Sample C
36.1
Sample D
37.6
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.1
Rat sample
Sample description
nTPM
Midbrain nTPM: 56.1
Samples: 4
Max nTPM: 59.3
Min nTPM: 54.1
Sample A
59.3
Sample A
54.1
Sample A
55.3
Sample A
55.8
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The Human Protein Atlas project is funded
