MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.7 nTPM
HPA Brain:45.1 nTPM
GTEx:29.7 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:46.8 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
2586 Male, age 75, left hemisphere 54.0
1870 Female, age 42, unknown 42.8
2411 Female, age 72, unknown 42.4
2019 Male, age 18, unknown 40.6
2828 Female, age 72, unknown 40.2
2219 Male, age 76, both hemispheres 39.5
2666 Male, age 74, left hemisphere 39.0
1830 Male, age 51, unknown 38.8
1833 Male, age 53, unknown 37.4
1827 Male, age 72, unknown 37.2
Dorsal raphe nucleus
nTPM: 43.3
2750 Male, age 76, both hemispheres 46.2
2298 Female, age 72, unknown 45.3
1828 Male, age 53, unknown 42.7
2047 Male, age 72, unknown 41.4
2016 Female, age 72, unknown 40.8
Inferior colliculus
nTPM: 36.2
1890 Male, age 53, unknown 38.7
1848 Female, age 42, unknown 35.8
2849 Male, age 72, unknown 35.7
2097 Female, age 72, unknown 34.6
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Periaquaductal grey, anterior
nTPM: 45.1
1947 Male, age 18, unknown 46.1
2502 Female, age 75, unknown 45.4
1795 Male, age 51, unknown 43.9
Periaquaductal grey, dorsal
nTPM: 34.3
1840 Male, age 53, unknown 36.3
2464 Female, age 72, unknown 34.6
2850 Male, age 76, both hemispheres 34.0
1831 Male, age 72, unknown 32.2
Periaquaductal grey, lateral
nTPM: 36.7
2272 Male, age 74, both hemispheres 40.6
2140 Male, age 76, both hemispheres 35.3
2053 Male, age 18, unknown 34.3
Pretectal area
nTPM: 38.8
2667 Female, age 75, unknown 42.0
2007 Male, age 72, unknown 41.4
1817 Female, age 42, unknown 40.5
1815 Male, age 53, unknown 40.2
2224 Female, age 72, unknown 39.9
2273 Male, age 74, both hemispheres 39.9
1816 Male, age 51, unknown 38.8
2825 Male, age 18, unknown 38.1
1944 Female, age 72, unknown 36.5
2316 Male, age 76, right hemisphere 35.0
2407 Male, age 75, both hemispheres 34.8
Red nucleus
nTPM: 39.9
2503 Female, age 72, unknown 43.6
2785 Male, age 18, unknown 42.6
2725 Female, age 75, unknown 42.0
1821 Female, age 72, unknown 40.6
1865 Male, age 51, unknown 40.6
2588 Male, age 74, left hemisphere 40.6
2769 Male, age 72, unknown 40.6
2227 Male, age 72, unknown 40.5
2584 Male, age 75, left hemisphere 38.9
1904 Male, age 53, unknown 38.2
1954 Female, age 42, unknown 37.3
2823 Male, age 76, right hemisphere 33.2
Substantia nigra
nTPM: 44.9
1916 Female, age 42, unknown 60.0
2241 Male, age 72, unknown 53.6
1851 Male, age 51, unknown 51.8
2699 Male, age 18, unknown 44.5
2665 Male, age 74, both hemispheres 42.7
1941 Male, age 53, unknown 42.4
1889 Female, age 72, unknown 40.3
2583 Male, age 75, right hemisphere 38.7
2409 Female, age 72, unknown 37.6
2590 Female, age 75, unknown 37.2
Superior colliculus
nTPM: 38.2
1796 Male, age 53, unknown 41.1
1913 Female, age 42, unknown 40.5
2587 Male, age 74, left hemisphere 39.8
2668 Female, age 75, unknown 39.6
2261 Male, age 18, unknown 38.1
2664 Male, age 75, both hemispheres 37.7
1839 Male, age 51, unknown 37.6
2087 Female, age 72, unknown 36.4
1895 Male, age 76, right hemisphere 36.3
1995 Male, age 72, unknown 35.3
Ventral tegmental area
nTPM: 43.9
1915 Female, age 42, unknown 48.4
2410 Female, age 72, unknown 45.4
2218 Male, age 76, both hemispheres 44.7
2223 Female, age 72, unknown 42.6
2021 Male, age 53, unknown 41.9
1942 Male, age 51, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.7
Samples: 183

Max nTPM: 46.3
Min nTPM: 20.1
Std nTPM: 4.5
Median nTPM: 29.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 46.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 45.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 42.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 42.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 40.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 39.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 39.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 38.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 37.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 37.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.3
FF:10158-103A5 76 years, female 66.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 37.2
Min nTPM: 24.1
Sample A Female 37.2
Sample B Female 29.6
Sample C Male 36.4
Sample D Male 24.1
Midbrain
nTPM: 29.9
Samples: 4

Max nTPM: 33.9
Min nTPM: 24.2
Sample A Female 33.9
Sample B Female 28.6
Sample C Male 32.7
Sample D Male 24.2
Periaqueductal gray
nTPM: 26.5
Samples: 3

Max nTPM: 31.7
Min nTPM: 20.4
Sample B Female 27.3
Sample C Male 31.7
Sample D Male 20.4
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 33.3
Min nTPM: 26.4
Sample A Female 33.3
Sample B Female 28.7
Sample C Male 30.2
Sample D Male 26.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 46.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 49.9
Min nTPM: 43.7
Sample A Male 44.2
Sample B Male 49.9
Sample C Female 49.6
Sample D Female 43.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68637856 Antisense, RP_050126_01_G05, Mouse strain C57BL/6J (56 days, male) 0.8

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