A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.2
nTPM
Monaco:
34.6
nTPM
Schmiedel:
29.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.2
HPA sample
nTPM
Memory B-cell nTPM: 75.6
Samples: 6
Max nTPM: 121.2
Min nTPM: 56.0
P10809_1017
56.0
P10809_1025
60.2
P10809_1044
121.2
P10809_1063
68.5
P10809_1092
76.9
P10809_1105
70.8
Naive B-cell nTPM: 77.2
Samples: 6
Max nTPM: 97.2
Min nTPM: 56.3
P10809_1011
56.3
P10809_1029
60.5
P10809_1048
97.2
P10809_1067
87.0
P10809_1091
74.5
P10809_1104
87.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 34.7
Samples: 4
Max nTPM: 59.9
Min nTPM: 18.3
RHH5310_R3677
33.0
RHH5218_R3590
18.3
RHH5247_R3619
59.9
RHH5276_R3648
27.4
Naive B-cell nTPM: 31.1
Samples: 4
Max nTPM: 38.3
Min nTPM: 25.1
RHH5308_R3675
25.1
RHH5216_R3588
30.6
RHH5245_R3617
30.5
RHH5274_R3646
38.3
Non-switched memory B-cell nTPM: 25.8
Samples: 4
Max nTPM: 33.6
Min nTPM: 17.1
RHH5309_R3676
20.4
RHH5217_R3589
33.6
RHH5246_R3618
17.1
RHH5275_R3647
31.9
Plasmablast nTPM: 26.3
Samples: 4
Max nTPM: 31.8
Min nTPM: 24.1
RHH5312_R3679
24.1
RHH5220_R3592
31.8
RHH5249_R3621
25.2
RHH5278_R3650
24.2
Switched memory B-cell nTPM: 28.7
Samples: 4
Max nTPM: 36.3
Min nTPM: 19.0
RHH5311_R3678
19.0
RHH5219_R3591
36.3
RHH5248_R3620
33.4
RHH5277_R3649
25.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.7
Schmiedel sample id
TPM
Naive B-cell TPM: 29.7
Samples: 91
Max TPM: 52.1
Min TPM: 10.7
B_CELL_NAIVE_1
52.1
B_CELL_NAIVE_2
44.3
B_CELL_NAIVE_3
42.4
B_CELL_NAIVE_4
40.0
B_CELL_NAIVE_5
39.6
B_CELL_NAIVE_6
39.1
B_CELL_NAIVE_7
38.7
B_CELL_NAIVE_8
37.9
B_CELL_NAIVE_9
37.7
B_CELL_NAIVE_10
36.7
B_CELL_NAIVE_11
36.0
B_CELL_NAIVE_12
35.0
B_CELL_NAIVE_13
34.6
B_CELL_NAIVE_14
34.6
B_CELL_NAIVE_15
34.6
B_CELL_NAIVE_16
34.0
B_CELL_NAIVE_17
33.7
B_CELL_NAIVE_18
33.6
B_CELL_NAIVE_19
33.2
B_CELL_NAIVE_20
33.0
B_CELL_NAIVE_21
32.9
B_CELL_NAIVE_22
32.9
B_CELL_NAIVE_23
32.9
B_CELL_NAIVE_24
32.7
B_CELL_NAIVE_25
32.7
B_CELL_NAIVE_26
32.6
B_CELL_NAIVE_27
32.5
B_CELL_NAIVE_28
32.5
B_CELL_NAIVE_29
32.1
B_CELL_NAIVE_30
32.0
B_CELL_NAIVE_31
31.8
B_CELL_NAIVE_32
31.7
B_CELL_NAIVE_33
31.7
B_CELL_NAIVE_34
31.3
B_CELL_NAIVE_35
31.0
B_CELL_NAIVE_36
30.7
B_CELL_NAIVE_37
30.6
B_CELL_NAIVE_38
30.1
B_CELL_NAIVE_39
29.5
B_CELL_NAIVE_40
29.5
B_CELL_NAIVE_41
29.5
B_CELL_NAIVE_42
29.3
B_CELL_NAIVE_43
29.1
B_CELL_NAIVE_44
29.0
B_CELL_NAIVE_45
28.7
B_CELL_NAIVE_46
28.7
B_CELL_NAIVE_47
28.5
B_CELL_NAIVE_48
28.5
B_CELL_NAIVE_49
28.4
B_CELL_NAIVE_50
28.2
B_CELL_NAIVE_51
28.2
B_CELL_NAIVE_52
28.2
B_CELL_NAIVE_53
28.1
B_CELL_NAIVE_54
28.0
B_CELL_NAIVE_55
28.0
B_CELL_NAIVE_56
27.9
B_CELL_NAIVE_57
27.6
B_CELL_NAIVE_58
27.4
B_CELL_NAIVE_59
27.4
B_CELL_NAIVE_60
27.3
B_CELL_NAIVE_61
27.3
B_CELL_NAIVE_62
27.1
B_CELL_NAIVE_63
27.1
B_CELL_NAIVE_64
26.9
B_CELL_NAIVE_65
26.6
B_CELL_NAIVE_66
26.5
B_CELL_NAIVE_67
26.5
B_CELL_NAIVE_68
26.3
B_CELL_NAIVE_69
26.1
B_CELL_NAIVE_70
26.0
B_CELL_NAIVE_71
25.7
B_CELL_NAIVE_72
25.7
B_CELL_NAIVE_73
25.7
B_CELL_NAIVE_74
25.6
B_CELL_NAIVE_75
25.6
B_CELL_NAIVE_76
25.3
B_CELL_NAIVE_77
24.8
B_CELL_NAIVE_78
24.8
B_CELL_NAIVE_79
24.7
B_CELL_NAIVE_80
24.6
B_CELL_NAIVE_81
24.5
B_CELL_NAIVE_82
24.5
B_CELL_NAIVE_83
24.0
B_CELL_NAIVE_84
23.5
B_CELL_NAIVE_85
23.3
B_CELL_NAIVE_86
22.8
B_CELL_NAIVE_87
22.3
B_CELL_NAIVE_88
20.5
B_CELL_NAIVE_89
18.6
B_CELL_NAIVE_90
18.1
B_CELL_NAIVE_91
10.7
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The Human Protein Atlas project is funded
