A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
49.1
nTPM
Monaco:
15.7
nTPM
Schmiedel:
11.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.1
HPA sample
nTPM
Classical monocyte nTPM: 25.4
Samples: 6
Max nTPM: 32.3
Min nTPM: 16.1
P10809_1003
16.1
P10809_1020
24.1
P10809_1039
32.3
P10809_1058
26.9
P10809_1080
24.8
P10809_1107
28.1
Intermediate monocyte nTPM: 40.9
Samples: 6
Max nTPM: 47.4
Min nTPM: 28.2
P10809_1004
28.2
P10809_1023
43.8
P10809_1042
46.5
P10809_1061
32.0
P10809_1081
47.4
P10809_1108
47.3
Non-classical monocyte nTPM: 49.1
Samples: 5
Max nTPM: 68.5
Min nTPM: 30.3
P10809_1005
32.4
P10809_1053
48.8
P10809_1072
30.3
P10809_1082
65.6
P10809_1109
68.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
Monaco sample
nTPM
Classical monocyte nTPM: 10.0
Samples: 4
Max nTPM: 18.4
Min nTPM: 5.0
RHH5313_R3680
7.4
RHH5221_R3593
9.2
RHH5250_R3622
5.0
RHH5279_R3651
18.4
Intermediate monocyte nTPM: 15.7
Samples: 4
Max nTPM: 18.1
Min nTPM: 14.4
RHH5314_R3681
15.6
RHH5222_R3594
18.1
RHH5251_R3623
14.4
RHH5280_R3652
14.7
Non-classical monocyte nTPM: 13.5
Samples: 4
Max nTPM: 18.6
Min nTPM: 9.3
RHH5315_R3682
18.6
RHH5223_R3595
12.1
RHH5252_R3624
14.0
RHH5281_R3653
9.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.4
Schmiedel sample id
TPM
Classical monocyte TPM: 5.8
Samples: 91
Max TPM: 9.0
Min TPM: 3.6
MONOCYTES_1
9.0
MONOCYTES_2
8.3
MONOCYTES_3
7.7
MONOCYTES_4
7.5
MONOCYTES_5
7.5
MONOCYTES_6
7.5
MONOCYTES_7
7.5
MONOCYTES_8
7.4
MONOCYTES_9
7.2
MONOCYTES_10
7.0
MONOCYTES_11
6.9
MONOCYTES_12
6.9
MONOCYTES_13
6.9
MONOCYTES_14
6.9
MONOCYTES_15
6.9
MONOCYTES_16
6.7
MONOCYTES_17
6.7
MONOCYTES_18
6.7
MONOCYTES_19
6.6
MONOCYTES_20
6.6
MONOCYTES_21
6.5
MONOCYTES_22
6.5
MONOCYTES_23
6.5
MONOCYTES_24
6.5
MONOCYTES_25
6.4
MONOCYTES_26
6.4
MONOCYTES_27
6.3
MONOCYTES_28
6.3
MONOCYTES_29
6.3
MONOCYTES_30
6.3
MONOCYTES_31
6.2
MONOCYTES_32
6.2
MONOCYTES_33
6.2
MONOCYTES_34
6.1
MONOCYTES_35
6.1
MONOCYTES_36
6.0
MONOCYTES_37
6.0
MONOCYTES_38
6.0
MONOCYTES_39
5.9
MONOCYTES_40
5.9
MONOCYTES_41
5.8
MONOCYTES_42
5.8
MONOCYTES_43
5.8
MONOCYTES_44
5.7
MONOCYTES_45
5.7
MONOCYTES_46
5.7
MONOCYTES_47
5.7
MONOCYTES_48
5.7
MONOCYTES_49
5.7
MONOCYTES_50
5.6
MONOCYTES_51
5.6
MONOCYTES_52
5.6
MONOCYTES_53
5.5
MONOCYTES_54
5.5
MONOCYTES_55
5.5
MONOCYTES_56
5.5
MONOCYTES_57
5.5
MONOCYTES_58
5.5
MONOCYTES_59
5.4
MONOCYTES_60
5.4
MONOCYTES_61
5.4
MONOCYTES_62
5.4
MONOCYTES_63
5.3
MONOCYTES_64
5.1
MONOCYTES_65
5.1
MONOCYTES_66
5.1
MONOCYTES_67
5.1
MONOCYTES_68
5.1
MONOCYTES_69
5.0
MONOCYTES_70
5.0
MONOCYTES_71
4.9
MONOCYTES_72
4.9
MONOCYTES_73
4.9
MONOCYTES_74
4.9
MONOCYTES_75
4.9
MONOCYTES_76
4.8
MONOCYTES_77
4.8
MONOCYTES_78
4.7
MONOCYTES_79
4.6
MONOCYTES_80
4.6
MONOCYTES_81
4.6
MONOCYTES_82
4.4
MONOCYTES_83
4.3
MONOCYTES_84
4.3
MONOCYTES_85
4.3
MONOCYTES_86
4.2
MONOCYTES_87
4.2
MONOCYTES_88
4.1
MONOCYTES_89
4.0
MONOCYTES_90
3.9
MONOCYTES_91
3.6
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Non-classical monocyte TPM: 11.4
Samples: 90
Max TPM: 16.3
Min TPM: 7.3
M2_1
16.3
M2_2
14.6
M2_3
14.6
M2_4
14.6
M2_5
14.6
M2_6
14.5
M2_7
14.1
M2_8
13.9
M2_9
13.7
M2_10
13.6
M2_11
13.5
M2_12
13.5
M2_13
13.5
M2_14
13.5
M2_15
13.4
M2_16
13.2
M2_17
13.2
M2_18
13.1
M2_19
13.1
M2_20
12.9
M2_21
12.9
M2_22
12.7
M2_23
12.6
M2_24
12.4
M2_25
12.3
M2_26
12.2
M2_27
12.1
M2_28
12.0
M2_29
11.9
M2_30
11.8
M2_31
11.8
M2_32
11.8
M2_33
11.8
M2_34
11.7
M2_35
11.7
M2_36
11.7
M2_37
11.6
M2_38
11.6
M2_39
11.6
M2_40
11.6
M2_41
11.5
M2_42
11.5
M2_43
11.5
M2_44
11.5
M2_45
11.4
M2_46
11.4
M2_47
11.2
M2_48
11.1
M2_49
11.1
M2_50
11.0
M2_51
11.0
M2_52
11.0
M2_53
11.0
M2_54
10.9
M2_55
10.8
M2_56
10.7
M2_57
10.7
M2_58
10.7
M2_59
10.6
M2_60
10.5
M2_61
10.5
M2_62
10.4
M2_63
10.4
M2_64
10.4
M2_65
10.4
M2_66
10.2
M2_67
10.2
M2_68
10.0
M2_69
10.0
M2_70
9.8
M2_71
9.8
M2_72
9.8
M2_73
9.7
M2_74
9.7
M2_75
9.5
M2_76
9.5
M2_77
9.4
M2_78
9.4
M2_79
9.3
M2_80
9.3
M2_81
9.3
M2_82
9.2
M2_83
9.1
M2_84
9.1
M2_85
8.9
M2_86
8.7
M2_87
8.2
M2_88
7.9
M2_89
7.9
M2_90
7.3
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