MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.5 nTPM
HPA Brain:74.9 nTPM
GTEx:103.5 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:170.1 nTPM
Mouse:29.5 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.7
2828 Female, age 72, unknown 43.8
2586 Male, age 75, left hemisphere 38.1
1833 Male, age 53, unknown 35.8
1870 Female, age 42, unknown 35.8
2666 Male, age 74, left hemisphere 34.6
2219 Male, age 76, both hemispheres 29.2
2411 Female, age 72, unknown 29.2
1830 Male, age 51, unknown 28.1
1827 Male, age 72, unknown 26.5
2019 Male, age 18, unknown 25.5
Dorsal raphe nucleus
nTPM: 54.1
2016 Female, age 72, unknown 83.6
2298 Female, age 72, unknown 74.0
1828 Male, age 53, unknown 49.4
2047 Male, age 72, unknown 35.1
2750 Male, age 76, both hemispheres 28.6
Inferior colliculus
nTPM: 35.0
2849 Male, age 72, unknown 51.2
1848 Female, age 42, unknown 32.2
1890 Male, age 53, unknown 31.6
2097 Female, age 72, unknown 25.1
Median raphe nucleus
nTPM: 46.7
2220 Male, age 76, midline 46.7
Periaquaductal grey, anterior
nTPM: 48.6
1795 Male, age 51, unknown 72.5
2502 Female, age 75, unknown 40.2
1947 Male, age 18, unknown 33.1
Periaquaductal grey, dorsal
nTPM: 74.9
2850 Male, age 76, both hemispheres 112.1
1840 Male, age 53, unknown 95.1
1831 Male, age 72, unknown 46.8
2464 Female, age 72, unknown 45.5
Periaquaductal grey, lateral
nTPM: 73.6
2140 Male, age 76, both hemispheres 93.7
2272 Male, age 74, both hemispheres 75.3
2053 Male, age 18, unknown 51.8
Pretectal area
nTPM: 40.7
2273 Male, age 74, both hemispheres 65.1
2224 Female, age 72, unknown 63.4
2825 Male, age 18, unknown 53.8
2667 Female, age 75, unknown 41.9
1815 Male, age 53, unknown 37.1
2007 Male, age 72, unknown 36.4
1817 Female, age 42, unknown 36.2
2316 Male, age 76, right hemisphere 33.2
2407 Male, age 75, both hemispheres 30.0
1944 Female, age 72, unknown 26.8
1816 Male, age 51, unknown 23.0
Red nucleus
nTPM: 37.8
2503 Female, age 72, unknown 51.0
2227 Male, age 72, unknown 49.2
2769 Male, age 72, unknown 48.9
1865 Male, age 51, unknown 39.2
1954 Female, age 42, unknown 36.8
2823 Male, age 76, right hemisphere 36.8
1821 Female, age 72, unknown 36.0
1904 Male, age 53, unknown 35.0
2785 Male, age 18, unknown 34.7
2725 Female, age 75, unknown 33.6
2588 Male, age 74, left hemisphere 31.9
2584 Male, age 75, left hemisphere 21.1
Substantia nigra
nTPM: 30.1
2699 Male, age 18, unknown 61.7
2409 Female, age 72, unknown 31.9
1851 Male, age 51, unknown 31.7
2590 Female, age 75, unknown 29.8
1916 Female, age 42, unknown 29.5
2665 Male, age 74, both hemispheres 27.0
1889 Female, age 72, unknown 26.9
2583 Male, age 75, right hemisphere 25.8
2241 Male, age 72, unknown 18.6
1941 Male, age 53, unknown 18.1
Superior colliculus
nTPM: 37.1
1995 Male, age 72, unknown 56.2
2668 Female, age 75, unknown 40.4
2664 Male, age 75, both hemispheres 39.1
1913 Female, age 42, unknown 38.8
1796 Male, age 53, unknown 37.0
2587 Male, age 74, left hemisphere 35.3
1839 Male, age 51, unknown 34.6
2261 Male, age 18, unknown 31.2
2087 Female, age 72, unknown 29.2
1895 Male, age 76, right hemisphere 29.1
Ventral tegmental area
nTPM: 34.6
2021 Male, age 53, unknown 40.9
1942 Male, age 51, unknown 36.9
1915 Female, age 42, unknown 36.5
2218 Male, age 76, both hemispheres 32.4
2223 Female, age 72, unknown 31.3
2410 Female, age 72, unknown 29.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 103.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.5
Samples: 183

Max nTPM: 469.8
Min nTPM: 16.0
Std nTPM: 55.3
Median nTPM: 95.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 469.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 272.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 262.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 248.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 229.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 209.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 203.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 198.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 198.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 194.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 192.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 170.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 170.1
Samples: 4

Max nTPM: 236.2
Min nTPM: 121.1
Sample A Female 159.5
Sample B Female 236.2
Sample C Male 121.1
Sample D Male 163.6
Midbrain
nTPM: 113.0
Samples: 4

Max nTPM: 228.1
Min nTPM: 57.7
Sample A Female 228.1
Sample B Female 75.1
Sample C Male 91.1
Sample D Male 57.7
Periaqueductal gray
nTPM: 110.1
Samples: 3

Max nTPM: 141.0
Min nTPM: 81.0
Sample B Female 81.0
Sample C Male 141.0
Sample D Male 108.4
Superior colliculi
nTPM: 150.7
Samples: 4

Max nTPM: 247.1
Min nTPM: 90.3
Sample A Female 170.1
Sample B Female 247.1
Sample C Male 90.3
Sample D Male 95.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 38.2
Min nTPM: 23.2
Sample A Male 33.1
Sample B Male 23.3
Sample C Female 23.2
Sample D Female 38.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
75077281 Antisense, RP_060412_02_E12, Mouse strain C57BL/6J (56 days, male) 2.0
68920749 Antisense, RP_050303_01_B06, Mouse strain C57BL/6J (56 days, male) 0.8

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