A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.0
nTPM
Monaco:
57.6
nTPM
Schmiedel:
22.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
HPA sample
nTPM
Memory B-cell nTPM: 23.7
Samples: 6
Max nTPM: 26.3
Min nTPM: 18.0
P10809_1017
18.0
P10809_1025
26.1
P10809_1044
26.3
P10809_1063
24.0
P10809_1092
21.6
P10809_1105
26.1
Naive B-cell nTPM: 24.0
Samples: 6
Max nTPM: 54.3
Min nTPM: 8.4
P10809_1011
8.4
P10809_1029
20.6
P10809_1048
54.3
P10809_1067
20.0
P10809_1091
14.4
P10809_1104
26.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 40.7
Samples: 4
Max nTPM: 59.0
Min nTPM: 23.9
RHH5310_R3677
59.0
RHH5218_R3590
23.9
RHH5247_R3619
50.6
RHH5276_R3648
29.1
Naive B-cell nTPM: 35.3
Samples: 4
Max nTPM: 40.2
Min nTPM: 27.3
RHH5308_R3675
36.8
RHH5216_R3588
40.2
RHH5245_R3617
27.3
RHH5274_R3646
37.0
Non-switched memory B-cell nTPM: 46.8
Samples: 4
Max nTPM: 60.7
Min nTPM: 27.0
RHH5309_R3676
60.7
RHH5217_R3589
41.0
RHH5246_R3618
58.3
RHH5275_R3647
27.0
Plasmablast nTPM: 57.6
Samples: 4
Max nTPM: 71.6
Min nTPM: 38.3
RHH5312_R3679
63.4
RHH5220_R3592
57.0
RHH5249_R3621
71.6
RHH5278_R3650
38.3
Switched memory B-cell nTPM: 46.0
Samples: 4
Max nTPM: 73.6
Min nTPM: 33.8
RHH5311_R3678
73.6
RHH5219_R3591
33.8
RHH5248_R3620
42.6
RHH5277_R3649
33.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.0
Schmiedel sample id
TPM
Naive B-cell TPM: 22.0
Samples: 91
Max TPM: 39.4
Min TPM: 12.7
B_CELL_NAIVE_1
39.4
B_CELL_NAIVE_2
35.8
B_CELL_NAIVE_3
34.8
B_CELL_NAIVE_4
34.1
B_CELL_NAIVE_5
33.8
B_CELL_NAIVE_6
32.5
B_CELL_NAIVE_7
31.4
B_CELL_NAIVE_8
29.3
B_CELL_NAIVE_9
29.1
B_CELL_NAIVE_10
29.0
B_CELL_NAIVE_11
28.4
B_CELL_NAIVE_12
28.2
B_CELL_NAIVE_13
28.2
B_CELL_NAIVE_14
28.1
B_CELL_NAIVE_15
27.9
B_CELL_NAIVE_16
27.8
B_CELL_NAIVE_17
26.8
B_CELL_NAIVE_18
26.2
B_CELL_NAIVE_19
26.2
B_CELL_NAIVE_20
25.8
B_CELL_NAIVE_21
25.6
B_CELL_NAIVE_22
25.6
B_CELL_NAIVE_23
25.5
B_CELL_NAIVE_24
24.7
B_CELL_NAIVE_25
24.6
B_CELL_NAIVE_26
24.6
B_CELL_NAIVE_27
24.5
B_CELL_NAIVE_28
24.0
B_CELL_NAIVE_29
23.9
B_CELL_NAIVE_30
23.9
B_CELL_NAIVE_31
23.1
B_CELL_NAIVE_32
22.9
B_CELL_NAIVE_33
22.9
B_CELL_NAIVE_34
22.7
B_CELL_NAIVE_35
22.6
B_CELL_NAIVE_36
22.5
B_CELL_NAIVE_37
22.5
B_CELL_NAIVE_38
22.4
B_CELL_NAIVE_39
22.4
B_CELL_NAIVE_40
22.1
B_CELL_NAIVE_41
22.1
B_CELL_NAIVE_42
21.9
B_CELL_NAIVE_43
21.8
B_CELL_NAIVE_44
21.6
B_CELL_NAIVE_45
21.5
B_CELL_NAIVE_46
21.3
B_CELL_NAIVE_47
21.2
B_CELL_NAIVE_48
21.1
B_CELL_NAIVE_49
20.9
B_CELL_NAIVE_50
20.9
B_CELL_NAIVE_51
20.8
B_CELL_NAIVE_52
20.8
B_CELL_NAIVE_53
20.6
B_CELL_NAIVE_54
20.5
B_CELL_NAIVE_55
20.5
B_CELL_NAIVE_56
20.3
B_CELL_NAIVE_57
20.3
B_CELL_NAIVE_58
20.2
B_CELL_NAIVE_59
20.0
B_CELL_NAIVE_60
19.5
B_CELL_NAIVE_61
19.5
B_CELL_NAIVE_62
19.4
B_CELL_NAIVE_63
19.2
B_CELL_NAIVE_64
18.8
B_CELL_NAIVE_65
18.3
B_CELL_NAIVE_66
18.0
B_CELL_NAIVE_67
18.0
B_CELL_NAIVE_68
18.0
B_CELL_NAIVE_69
17.7
B_CELL_NAIVE_70
17.7
B_CELL_NAIVE_71
17.6
B_CELL_NAIVE_72
17.6
B_CELL_NAIVE_73
17.5
B_CELL_NAIVE_74
16.8
B_CELL_NAIVE_75
16.7
B_CELL_NAIVE_76
16.3
B_CELL_NAIVE_77
16.3
B_CELL_NAIVE_78
16.1
B_CELL_NAIVE_79
15.9
B_CELL_NAIVE_80
15.7
B_CELL_NAIVE_81
15.7
B_CELL_NAIVE_82
15.6
B_CELL_NAIVE_83
15.5
B_CELL_NAIVE_84
15.2
B_CELL_NAIVE_85
15.1
B_CELL_NAIVE_86
15.0
B_CELL_NAIVE_87
14.0
B_CELL_NAIVE_88
13.9
B_CELL_NAIVE_89
13.6
B_CELL_NAIVE_90
13.6
B_CELL_NAIVE_91
12.7
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The Human Protein Atlas project is funded
