A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.5
nTPM
Monaco:
75.7
nTPM
Schmiedel:
37.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.5
HPA sample
nTPM
Classical monocyte nTPM: 34.1
Samples: 6
Max nTPM: 43.3
Min nTPM: 23.7
P10809_1003
23.7
P10809_1020
43.3
P10809_1039
37.4
P10809_1058
30.2
P10809_1080
35.1
P10809_1107
35.1
Intermediate monocyte nTPM: 30.5
Samples: 6
Max nTPM: 44.6
Min nTPM: 22.9
P10809_1004
26.9
P10809_1023
30.9
P10809_1042
22.9
P10809_1061
25.5
P10809_1081
32.2
P10809_1108
44.6
Non-classical monocyte nTPM: 34.5
Samples: 5
Max nTPM: 43.8
Min nTPM: 26.8
P10809_1005
26.8
P10809_1053
31.8
P10809_1072
28.8
P10809_1082
43.8
P10809_1109
41.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.7
Monaco sample
nTPM
Classical monocyte nTPM: 74.6
Samples: 4
Max nTPM: 98.5
Min nTPM: 56.4
RHH5313_R3680
60.2
RHH5221_R3593
56.4
RHH5250_R3622
98.5
RHH5279_R3651
83.2
Intermediate monocyte nTPM: 75.7
Samples: 4
Max nTPM: 86.2
Min nTPM: 64.9
RHH5314_R3681
83.6
RHH5222_R3594
68.2
RHH5251_R3623
64.9
RHH5280_R3652
86.2
Non-classical monocyte nTPM: 54.4
Samples: 4
Max nTPM: 67.9
Min nTPM: 38.3
RHH5315_R3682
50.4
RHH5223_R3595
61.0
RHH5252_R3624
38.3
RHH5281_R3653
67.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.1
Schmiedel sample id
TPM
Classical monocyte TPM: 37.1
Samples: 91
Max TPM: 53.1
Min TPM: 27.6
MONOCYTES_1
53.1
MONOCYTES_2
48.6
MONOCYTES_3
46.6
MONOCYTES_4
45.8
MONOCYTES_5
45.2
MONOCYTES_6
45.0
MONOCYTES_7
44.9
MONOCYTES_8
44.2
MONOCYTES_9
44.1
MONOCYTES_10
43.5
MONOCYTES_11
42.8
MONOCYTES_12
42.7
MONOCYTES_13
42.3
MONOCYTES_14
41.9
MONOCYTES_15
41.2
MONOCYTES_16
41.1
MONOCYTES_17
40.8
MONOCYTES_18
40.8
MONOCYTES_19
40.7
MONOCYTES_20
40.3
MONOCYTES_21
40.1
MONOCYTES_22
40.0
MONOCYTES_23
39.6
MONOCYTES_24
39.5
MONOCYTES_25
39.2
MONOCYTES_26
39.2
MONOCYTES_27
39.0
MONOCYTES_28
39.0
MONOCYTES_29
38.9
MONOCYTES_30
38.8
MONOCYTES_31
38.8
MONOCYTES_32
38.7
MONOCYTES_33
38.6
MONOCYTES_34
38.6
MONOCYTES_35
38.3
MONOCYTES_36
38.1
MONOCYTES_37
37.8
MONOCYTES_38
37.8
MONOCYTES_39
37.8
MONOCYTES_40
37.7
MONOCYTES_41
37.6
MONOCYTES_42
37.5
MONOCYTES_43
37.5
MONOCYTES_44
37.5
MONOCYTES_45
37.0
MONOCYTES_46
36.7
MONOCYTES_47
36.5
MONOCYTES_48
36.3
MONOCYTES_49
36.2
MONOCYTES_50
36.1
MONOCYTES_51
35.9
MONOCYTES_52
35.8
MONOCYTES_53
35.7
MONOCYTES_54
35.6
MONOCYTES_55
35.5
MONOCYTES_56
35.5
MONOCYTES_57
35.2
MONOCYTES_58
35.2
MONOCYTES_59
35.1
MONOCYTES_60
35.1
MONOCYTES_61
34.8
MONOCYTES_62
34.7
MONOCYTES_63
34.7
MONOCYTES_64
34.4
MONOCYTES_65
34.4
MONOCYTES_66
34.3
MONOCYTES_67
34.1
MONOCYTES_68
33.8
MONOCYTES_69
33.8
MONOCYTES_70
33.8
MONOCYTES_71
33.7
MONOCYTES_72
33.6
MONOCYTES_73
33.4
MONOCYTES_74
33.4
MONOCYTES_75
33.1
MONOCYTES_76
33.0
MONOCYTES_77
32.9
MONOCYTES_78
32.5
MONOCYTES_79
31.6
MONOCYTES_80
31.2
MONOCYTES_81
31.2
MONOCYTES_82
31.1
MONOCYTES_83
31.0
MONOCYTES_84
30.9
MONOCYTES_85
30.7
MONOCYTES_86
30.5
MONOCYTES_87
29.4
MONOCYTES_88
29.2
MONOCYTES_89
28.7
MONOCYTES_90
28.5
MONOCYTES_91
27.6
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Non-classical monocyte TPM: 30.3
Samples: 90
Max TPM: 47.4
Min TPM: 18.9
M2_1
47.4
M2_2
44.2
M2_3
43.9
M2_4
39.4
M2_5
39.3
M2_6
38.8
M2_7
38.6
M2_8
38.5
M2_9
37.8
M2_10
37.5
M2_11
37.2
M2_12
36.9
M2_13
35.9
M2_14
34.6
M2_15
34.5
M2_16
33.7
M2_17
33.6
M2_18
33.1
M2_19
33.0
M2_20
33.0
M2_21
32.9
M2_22
32.9
M2_23
32.8
M2_24
32.7
M2_25
32.6
M2_26
32.5
M2_27
32.4
M2_28
32.2
M2_29
32.2
M2_30
32.0
M2_31
32.0
M2_32
31.9
M2_33
31.8
M2_34
31.7
M2_35
31.4
M2_36
31.2
M2_37
30.8
M2_38
30.7
M2_39
30.5
M2_40
30.5
M2_41
30.4
M2_42
30.3
M2_43
30.2
M2_44
29.9
M2_45
29.4
M2_46
29.3
M2_47
29.3
M2_48
29.3
M2_49
29.2
M2_50
29.2
M2_51
28.9
M2_52
28.8
M2_53
28.8
M2_54
28.8
M2_55
28.7
M2_56
28.4
M2_57
28.3
M2_58
28.3
M2_59
28.0
M2_60
28.0
M2_61
27.9
M2_62
27.6
M2_63
27.5
M2_64
27.5
M2_65
27.4
M2_66
27.1
M2_67
27.1
M2_68
26.9
M2_69
26.7
M2_70
26.4
M2_71
26.3
M2_72
26.3
M2_73
25.7
M2_74
25.6
M2_75
25.6
M2_76
25.4
M2_77
25.3
M2_78
25.3
M2_79
25.1
M2_80
24.9
M2_81
24.5
M2_82
24.5
M2_83
24.3
M2_84
24.1
M2_85
24.0
M2_86
23.9
M2_87
23.7
M2_88
21.8
M2_89
20.0
M2_90
18.9
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