A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.4
nTPM
Monaco:
22.5
nTPM
Schmiedel:
71.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
HPA sample
nTPM
NK-cell nTPM: 0.4
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.0
P10809_1013
1.6
P10809_1033
0.0
P10809_1052
0.0
P10809_1071
0.6
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.5
Monaco sample
nTPM
NK-cell nTPM: 22.5
Samples: 4
Max nTPM: 33.9
Min nTPM: 15.8
RHH5316_R3683
19.6
RHH5224_R3596
33.9
RHH5253_R3625
15.8
RHH5282_R3654
20.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.7
Schmiedel sample id
TPM
NK-cell TPM: 71.7
Samples: 90
Max TPM: 109.7
Min TPM: 42.9
NK_1
109.7
NK_2
104.0
NK_3
101.1
NK_4
93.3
NK_5
91.4
NK_6
90.7
NK_7
90.6
NK_8
89.6
NK_9
88.8
NK_10
88.5
NK_11
87.4
NK_12
87.2
NK_13
87.0
NK_14
85.9
NK_15
85.2
NK_16
84.3
NK_17
84.1
NK_18
83.6
NK_19
83.4
NK_20
82.3
NK_21
81.8
NK_22
81.7
NK_23
80.0
NK_24
79.3
NK_25
78.9
NK_26
78.7
NK_27
78.2
NK_28
77.7
NK_29
77.2
NK_30
74.9
NK_31
74.0
NK_32
73.4
NK_33
73.2
NK_34
73.0
NK_35
73.0
NK_36
72.7
NK_37
72.2
NK_38
71.3
NK_39
71.3
NK_40
71.3
NK_41
71.1
NK_42
71.0
NK_43
70.9
NK_44
70.8
NK_45
70.8
NK_46
69.9
NK_47
69.7
NK_48
69.6
NK_49
69.4
NK_50
69.3
NK_51
68.4
NK_52
68.3
NK_53
68.3
NK_54
68.0
NK_55
67.6
NK_56
67.4
NK_57
67.0
NK_58
66.6
NK_59
66.5
NK_60
65.7
NK_61
65.4
NK_62
65.2
NK_63
64.7
NK_64
64.5
NK_65
64.4
NK_66
64.3
NK_67
64.1
NK_68
64.0
NK_69
63.6
NK_70
62.8
NK_71
62.8
NK_72
62.4
NK_73
60.9
NK_74
60.5
NK_75
60.2
NK_76
60.0
NK_77
60.0
NK_78
59.8
NK_79
59.6
NK_80
57.7
NK_81
57.1
NK_82
56.0
NK_83
55.1
NK_84
54.9
NK_85
54.6
NK_86
53.6
NK_87
51.0
NK_88
47.5
NK_89
43.3
NK_90
42.9
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