A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
17.2
nTPM
Schmiedel:
56.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
Classical monocyte nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.0
P10809_1039
0.0
P10809_1058
0.3
P10809_1080
0.1
P10809_1107
0.1
Intermediate monocyte nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1004
0.3
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.2
P10809_1108
0.1
Non-classical monocyte nTPM: 0.2
Samples: 5
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1005
0.1
P10809_1053
0.4
P10809_1072
0.0
P10809_1082
0.4
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
Monaco sample
nTPM
Classical monocyte nTPM: 14.6
Samples: 4
Max nTPM: 25.3
Min nTPM: 7.7
RHH5313_R3680
17.1
RHH5221_R3593
25.3
RHH5250_R3622
7.7
RHH5279_R3651
8.4
Intermediate monocyte nTPM: 17.3
Samples: 4
Max nTPM: 26.2
Min nTPM: 10.5
RHH5314_R3681
15.7
RHH5222_R3594
26.2
RHH5251_R3623
10.5
RHH5280_R3652
16.6
Non-classical monocyte nTPM: 16.2
Samples: 4
Max nTPM: 25.1
Min nTPM: 10.4
RHH5315_R3682
16.7
RHH5223_R3595
25.1
RHH5252_R3624
10.4
RHH5281_R3653
12.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.4
Schmiedel sample id
TPM
Classical monocyte TPM: 32.7
Samples: 91
Max TPM: 75.4
Min TPM: 13.9
MONOCYTES_1
75.4
MONOCYTES_2
74.2
MONOCYTES_3
62.4
MONOCYTES_4
62.2
MONOCYTES_5
54.3
MONOCYTES_6
52.7
MONOCYTES_7
51.8
MONOCYTES_8
51.3
MONOCYTES_9
45.1
MONOCYTES_10
43.6
MONOCYTES_11
42.2
MONOCYTES_12
41.2
MONOCYTES_13
40.6
MONOCYTES_14
40.1
MONOCYTES_15
39.9
MONOCYTES_16
37.2
MONOCYTES_17
36.9
MONOCYTES_18
36.8
MONOCYTES_19
36.6
MONOCYTES_20
36.2
MONOCYTES_21
35.9
MONOCYTES_22
35.7
MONOCYTES_23
35.5
MONOCYTES_24
34.8
MONOCYTES_25
34.8
MONOCYTES_26
34.1
MONOCYTES_27
34.1
MONOCYTES_28
33.8
MONOCYTES_29
33.8
MONOCYTES_30
33.7
MONOCYTES_31
33.6
MONOCYTES_32
33.1
MONOCYTES_33
33.1
MONOCYTES_34
33.1
MONOCYTES_35
33.0
MONOCYTES_36
33.0
MONOCYTES_37
32.8
MONOCYTES_38
32.6
MONOCYTES_39
32.4
MONOCYTES_40
32.2
MONOCYTES_41
32.1
MONOCYTES_42
31.9
MONOCYTES_43
31.4
MONOCYTES_44
31.3
MONOCYTES_45
31.1
MONOCYTES_46
30.9
MONOCYTES_47
30.7
MONOCYTES_48
30.5
MONOCYTES_49
30.4
MONOCYTES_50
30.1
MONOCYTES_51
30.0
MONOCYTES_52
29.9
MONOCYTES_53
29.8
MONOCYTES_54
29.7
MONOCYTES_55
29.6
MONOCYTES_56
29.3
MONOCYTES_57
29.2
MONOCYTES_58
28.4
MONOCYTES_59
28.0
MONOCYTES_60
27.7
MONOCYTES_61
27.4
MONOCYTES_62
27.4
MONOCYTES_63
27.3
MONOCYTES_64
27.0
MONOCYTES_65
26.9
MONOCYTES_66
26.7
MONOCYTES_67
26.2
MONOCYTES_68
26.2
MONOCYTES_69
25.6
MONOCYTES_70
25.0
MONOCYTES_71
24.9
MONOCYTES_72
24.8
MONOCYTES_73
24.7
MONOCYTES_74
24.4
MONOCYTES_75
24.3
MONOCYTES_76
24.1
MONOCYTES_77
23.7
MONOCYTES_78
23.6
MONOCYTES_79
23.3
MONOCYTES_80
23.2
MONOCYTES_81
22.9
MONOCYTES_82
22.9
MONOCYTES_83
22.8
MONOCYTES_84
22.7
MONOCYTES_85
22.6
MONOCYTES_86
21.8
MONOCYTES_87
21.6
MONOCYTES_88
21.5
MONOCYTES_89
21.3
MONOCYTES_90
17.3
MONOCYTES_91
13.9
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Non-classical monocyte TPM: 56.4
Samples: 90
Max TPM: 117.3
Min TPM: 35.4
M2_1
117.3
M2_2
102.9
M2_3
102.8
M2_4
102.2
M2_5
93.0
M2_6
85.7
M2_7
85.4
M2_8
83.7
M2_9
81.7
M2_10
79.4
M2_11
75.5
M2_12
75.2
M2_13
74.4
M2_14
72.9
M2_15
68.6
M2_16
66.8
M2_17
65.6
M2_18
64.9
M2_19
64.8
M2_20
63.2
M2_21
62.7
M2_22
61.5
M2_23
61.3
M2_24
60.9
M2_25
59.8
M2_26
59.6
M2_27
59.1
M2_28
58.9
M2_29
57.1
M2_30
57.1
M2_31
56.4
M2_32
55.8
M2_33
55.4
M2_34
55.2
M2_35
55.1
M2_36
54.8
M2_37
54.7
M2_38
54.7
M2_39
53.9
M2_40
53.5
M2_41
53.3
M2_42
53.2
M2_43
52.8
M2_44
52.7
M2_45
52.4
M2_46
52.3
M2_47
51.9
M2_48
51.7
M2_49
51.4
M2_50
51.3
M2_51
51.0
M2_52
49.2
M2_53
49.0
M2_54
48.9
M2_55
48.8
M2_56
48.7
M2_57
48.7
M2_58
48.4
M2_59
47.9
M2_60
47.3
M2_61
47.0
M2_62
46.6
M2_63
46.6
M2_64
46.2
M2_65
46.0
M2_66
45.4
M2_67
45.3
M2_68
45.2
M2_69
44.8
M2_70
44.8
M2_71
44.8
M2_72
44.6
M2_73
44.5
M2_74
44.5
M2_75
44.3
M2_76
44.2
M2_77
43.5
M2_78
43.0
M2_79
42.8
M2_80
42.5
M2_81
42.3
M2_82
42.0
M2_83
41.8
M2_84
41.4
M2_85
41.3
M2_86
39.9
M2_87
39.6
M2_88
36.5
M2_89
36.3
M2_90
35.4
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