MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:74.2 nTPM
GTEx:20.0 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:28.2 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.6
2586 Male, age 75, left hemisphere 104.1
2019 Male, age 18, unknown 76.1
2666 Male, age 74, left hemisphere 74.6
2828 Female, age 72, unknown 68.4
1833 Male, age 53, unknown 61.6
1827 Male, age 72, unknown 58.3
2411 Female, age 72, unknown 57.5
1830 Male, age 51, unknown 55.8
1870 Female, age 42, unknown 53.8
2219 Male, age 76, both hemispheres 45.7
Dorsal raphe nucleus
nTPM: 69.0
2016 Female, age 72, unknown 78.1
2047 Male, age 72, unknown 78.1
1828 Male, age 53, unknown 66.5
2298 Female, age 72, unknown 62.6
2750 Male, age 76, both hemispheres 60.0
Inferior colliculus
nTPM: 57.3
1890 Male, age 53, unknown 61.5
2849 Male, age 72, unknown 60.6
1848 Female, age 42, unknown 54.8
2097 Female, age 72, unknown 52.3
Median raphe nucleus
nTPM: 62.5
2220 Male, age 76, midline 62.5
Periaquaductal grey, anterior
nTPM: 66.0
1795 Male, age 51, unknown 66.7
1947 Male, age 18, unknown 65.8
2502 Female, age 75, unknown 65.4
Periaquaductal grey, dorsal
nTPM: 65.9
2850 Male, age 76, both hemispheres 75.9
1840 Male, age 53, unknown 74.8
2464 Female, age 72, unknown 59.2
1831 Male, age 72, unknown 53.6
Periaquaductal grey, lateral
nTPM: 73.5
2140 Male, age 76, both hemispheres 91.7
2272 Male, age 74, both hemispheres 66.7
2053 Male, age 18, unknown 62.0
Pretectal area
nTPM: 66.0
2007 Male, age 72, unknown 79.0
2316 Male, age 76, right hemisphere 78.1
2407 Male, age 75, both hemispheres 73.4
1817 Female, age 42, unknown 68.4
1944 Female, age 72, unknown 67.9
1816 Male, age 51, unknown 65.6
2224 Female, age 72, unknown 62.4
2825 Male, age 18, unknown 60.8
1815 Male, age 53, unknown 60.4
2273 Male, age 74, both hemispheres 59.1
2667 Female, age 75, unknown 50.5
Red nucleus
nTPM: 63.3
2584 Male, age 75, left hemisphere 89.2
2785 Male, age 18, unknown 71.2
2588 Male, age 74, left hemisphere 66.0
2769 Male, age 72, unknown 65.8
1904 Male, age 53, unknown 61.5
2503 Female, age 72, unknown 60.5
1954 Female, age 42, unknown 59.6
2227 Male, age 72, unknown 59.1
2725 Female, age 75, unknown 59.1
2823 Male, age 76, right hemisphere 57.9
1865 Male, age 51, unknown 57.5
1821 Female, age 72, unknown 52.3
Substantia nigra
nTPM: 74.2
1916 Female, age 42, unknown 88.7
2583 Male, age 75, right hemisphere 84.7
2590 Female, age 75, unknown 84.5
2665 Male, age 74, both hemispheres 82.2
1851 Male, age 51, unknown 76.2
2241 Male, age 72, unknown 70.3
2699 Male, age 18, unknown 67.7
1941 Male, age 53, unknown 67.6
1889 Female, age 72, unknown 66.8
2409 Female, age 72, unknown 53.2
Superior colliculus
nTPM: 64.4
2664 Male, age 75, both hemispheres 88.4
2668 Female, age 75, unknown 76.7
2261 Male, age 18, unknown 64.5
1839 Male, age 51, unknown 62.7
2087 Female, age 72, unknown 62.3
1995 Male, age 72, unknown 61.5
2587 Male, age 74, left hemisphere 61.1
1796 Male, age 53, unknown 60.3
1913 Female, age 42, unknown 56.8
1895 Male, age 76, right hemisphere 49.5
Ventral tegmental area
nTPM: 66.8
1942 Male, age 51, unknown 79.8
2021 Male, age 53, unknown 73.0
1915 Female, age 42, unknown 70.4
2410 Female, age 72, unknown 65.1
2218 Male, age 76, both hemispheres 59.5
2223 Female, age 72, unknown 53.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 183

Max nTPM: 37.4
Min nTPM: 9.8
Std nTPM: 4.9
Median nTPM: 19.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 37.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 37.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 35.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 32.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 30.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 29.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 29.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 28.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 28.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 28.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.5
FF:10158-103A5 76 years, female 25.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 23.3
Min nTPM: 18.4
Sample A Female 22.5
Sample B Female 21.1
Sample C Male 23.3
Sample D Male 18.4
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 25.3
Min nTPM: 18.6
Sample A Female 18.7
Sample B Female 18.6
Sample C Male 25.3
Sample D Male 20.0
Periaqueductal gray
nTPM: 18.5
Samples: 3

Max nTPM: 21.4
Min nTPM: 16.2
Sample B Female 18.0
Sample C Male 21.4
Sample D Male 16.2
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.3
Sample A Female 20.1
Sample B Female 15.3
Sample C Male 23.4
Sample D Male 21.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 29.0
Min nTPM: 27.1
Sample A Male 28.3
Sample B Male 28.2
Sample C Female 29.0
Sample D Female 27.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69817946 Antisense, RP_050510_04_A12, Mouse strain C57BL/6J (56 days, male) 2.7

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