A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
33.5
nTPM
Schmiedel:
224.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
NK-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1013
0.5
P10809_1033
0.0
P10809_1052
0.4
P10809_1071
0.6
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.5
Monaco sample
nTPM
NK-cell nTPM: 33.5
Samples: 4
Max nTPM: 45.5
Min nTPM: 27.4
RHH5316_R3683
30.8
RHH5224_R3596
27.4
RHH5253_R3625
45.5
RHH5282_R3654
30.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
224.3
Schmiedel sample id
TPM
NK-cell TPM: 224.3
Samples: 90
Max TPM: 351.2
Min TPM: 113.5
NK_1
351.2
NK_2
337.3
NK_3
333.0
NK_4
328.8
NK_5
326.2
NK_6
325.4
NK_7
318.7
NK_8
318.6
NK_9
314.3
NK_10
311.8
NK_11
308.8
NK_12
307.9
NK_13
306.5
NK_14
297.6
NK_15
292.8
NK_16
288.4
NK_17
280.6
NK_18
279.5
NK_19
278.5
NK_20
276.7
NK_21
272.3
NK_22
270.5
NK_23
266.8
NK_24
266.6
NK_25
264.9
NK_26
262.9
NK_27
256.9
NK_28
255.5
NK_29
247.7
NK_30
242.3
NK_31
242.0
NK_32
241.6
NK_33
241.5
NK_34
240.9
NK_35
240.8
NK_36
233.8
NK_37
232.8
NK_38
227.9
NK_39
224.7
NK_40
224.5
NK_41
223.5
NK_42
221.7
NK_43
221.1
NK_44
220.3
NK_45
217.3
NK_46
216.7
NK_47
214.8
NK_48
212.7
NK_49
209.9
NK_50
209.3
NK_51
209.0
NK_52
208.9
NK_53
206.4
NK_54
199.3
NK_55
199.3
NK_56
197.5
NK_57
196.4
NK_58
195.4
NK_59
194.0
NK_60
193.3
NK_61
192.3
NK_62
191.3
NK_63
188.4
NK_64
187.5
NK_65
186.1
NK_66
185.5
NK_67
184.3
NK_68
182.7
NK_69
178.4
NK_70
177.5
NK_71
172.9
NK_72
170.9
NK_73
170.7
NK_74
168.6
NK_75
168.1
NK_76
167.5
NK_77
164.7
NK_78
164.3
NK_79
160.0
NK_80
158.5
NK_81
156.2
NK_82
154.8
NK_83
150.4
NK_84
138.4
NK_85
136.8
NK_86
131.8
NK_87
129.4
NK_88
128.8
NK_89
119.7
NK_90
113.5
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