MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.1 nTPM
HPA Brain:220.2 nTPM
GTEx:136.1 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:126.3 nTPM
Mouse:81.3 nTPM
Allen mouse:21.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 220.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 182.8
2586 Male, age 75, left hemisphere 334.6
2828 Female, age 72, unknown 210.8
1827 Male, age 72, unknown 201.2
2666 Male, age 74, left hemisphere 195.1
1870 Female, age 42, unknown 162.5
2219 Male, age 76, both hemispheres 160.7
2411 Female, age 72, unknown 155.1
1830 Male, age 51, unknown 138.1
1833 Male, age 53, unknown 137.2
2019 Male, age 18, unknown 132.7
Dorsal raphe nucleus
nTPM: 170.1
2047 Male, age 72, unknown 200.3
2298 Female, age 72, unknown 182.3
1828 Male, age 53, unknown 158.2
2016 Female, age 72, unknown 157.3
2750 Male, age 76, both hemispheres 152.2
Inferior colliculus
nTPM: 153.8
2849 Male, age 72, unknown 169.8
1848 Female, age 42, unknown 154.7
2097 Female, age 72, unknown 146.5
1890 Male, age 53, unknown 144.4
Median raphe nucleus
nTPM: 180.5
2220 Male, age 76, midline 180.5
Periaquaductal grey, anterior
nTPM: 220.2
1795 Male, age 51, unknown 235.0
1947 Male, age 18, unknown 216.7
2502 Female, age 75, unknown 208.9
Periaquaductal grey, dorsal
nTPM: 163.0
1840 Male, age 53, unknown 182.3
1831 Male, age 72, unknown 159.3
2850 Male, age 76, both hemispheres 155.8
2464 Female, age 72, unknown 154.5
Periaquaductal grey, lateral
nTPM: 165.1
2053 Male, age 18, unknown 174.9
2272 Male, age 74, both hemispheres 161.7
2140 Male, age 76, both hemispheres 158.6
Pretectal area
nTPM: 174.7
1816 Male, age 51, unknown 201.3
2007 Male, age 72, unknown 191.5
1944 Female, age 72, unknown 188.7
2825 Male, age 18, unknown 188.5
2224 Female, age 72, unknown 188.2
2407 Male, age 75, both hemispheres 182.0
2667 Female, age 75, unknown 167.8
1815 Male, age 53, unknown 162.6
1817 Female, age 42, unknown 158.4
2273 Male, age 74, both hemispheres 154.3
2316 Male, age 76, right hemisphere 138.0
Red nucleus
nTPM: 140.4
2584 Male, age 75, left hemisphere 192.2
2725 Female, age 75, unknown 176.7
2588 Male, age 74, left hemisphere 167.9
2769 Male, age 72, unknown 144.9
2785 Male, age 18, unknown 144.4
2503 Female, age 72, unknown 139.7
2227 Male, age 72, unknown 135.8
1904 Male, age 53, unknown 129.9
1954 Female, age 42, unknown 122.6
1865 Male, age 51, unknown 116.6
1821 Female, age 72, unknown 108.9
2823 Male, age 76, right hemisphere 105.1
Substantia nigra
nTPM: 164.1
1916 Female, age 42, unknown 235.4
1941 Male, age 53, unknown 183.1
1851 Male, age 51, unknown 182.5
2583 Male, age 75, right hemisphere 169.2
2665 Male, age 74, both hemispheres 167.9
2699 Male, age 18, unknown 159.4
1889 Female, age 72, unknown 155.3
2590 Female, age 75, unknown 140.2
2241 Male, age 72, unknown 126.2
2409 Female, age 72, unknown 121.5
Superior colliculus
nTPM: 179.4
2664 Male, age 75, both hemispheres 302.2
1796 Male, age 53, unknown 209.6
2261 Male, age 18, unknown 196.7
1839 Male, age 51, unknown 176.3
2587 Male, age 74, left hemisphere 171.6
2668 Female, age 75, unknown 170.5
2087 Female, age 72, unknown 166.7
1913 Female, age 42, unknown 138.6
1995 Male, age 72, unknown 133.1
1895 Male, age 76, right hemisphere 128.7
Ventral tegmental area
nTPM: 171.8
1915 Female, age 42, unknown 189.8
2021 Male, age 53, unknown 184.6
1942 Male, age 51, unknown 181.6
2223 Female, age 72, unknown 160.5
2218 Male, age 76, both hemispheres 159.4
2410 Female, age 72, unknown 154.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 136.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.1
Samples: 183

Max nTPM: 245.0
Min nTPM: 59.7
Std nTPM: 37.1
Median nTPM: 133.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 245.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 233.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 233.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 231.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 219.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 219.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 218.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 217.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 208.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 205.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 200.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.5
FF:10158-103A5 76 years, female 91.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 126.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 126.3
Samples: 4

Max nTPM: 170.8
Min nTPM: 75.6
Sample A Female 170.8
Sample B Female 107.0
Sample C Male 151.9
Sample D Male 75.6
Midbrain
nTPM: 125.6
Samples: 4

Max nTPM: 146.0
Min nTPM: 103.4
Sample A Female 143.2
Sample B Female 109.9
Sample C Male 146.0
Sample D Male 103.4
Periaqueductal gray
nTPM: 101.3
Samples: 3

Max nTPM: 129.7
Min nTPM: 80.3
Sample B Female 94.0
Sample C Male 129.7
Sample D Male 80.3
Superior colliculi
nTPM: 120.3
Samples: 4

Max nTPM: 134.8
Min nTPM: 104.8
Sample A Female 134.8
Sample B Female 109.8
Sample C Male 131.9
Sample D Male 104.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 81.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 90.9
Min nTPM: 73.7
Sample A Male 90.9
Sample B Male 73.7
Sample C Female 78.3
Sample D Female 82.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.9
715 Antisense, RP_040324_01_E08, Mouse strain C57BL/6J (56 days, male) 21.9
716 Antisense, RP_040324_01_E08, Mouse strain C57BL/6J (56 days, male) 8.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo