MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:42.6 nTPM
GTEx:16.6 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:41.2 nTPM
Mouse:48.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.0
2411 Female, age 72, unknown 47.4
1870 Female, age 42, unknown 45.6
2019 Male, age 18, unknown 43.0
1830 Male, age 51, unknown 42.7
1833 Male, age 53, unknown 39.5
2828 Female, age 72, unknown 32.8
2219 Male, age 76, both hemispheres 30.9
1827 Male, age 72, unknown 30.8
2666 Male, age 74, left hemisphere 29.1
2586 Male, age 75, left hemisphere 27.9
Dorsal raphe nucleus
nTPM: 30.0
2750 Male, age 76, both hemispheres 38.0
2016 Female, age 72, unknown 32.4
2298 Female, age 72, unknown 29.0
1828 Male, age 53, unknown 28.4
2047 Male, age 72, unknown 22.4
Inferior colliculus
nTPM: 30.6
2097 Female, age 72, unknown 33.5
1890 Male, age 53, unknown 31.9
1848 Female, age 42, unknown 30.6
2849 Male, age 72, unknown 26.3
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Periaquaductal grey, anterior
nTPM: 29.5
2502 Female, age 75, unknown 35.6
1947 Male, age 18, unknown 30.9
1795 Male, age 51, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 23.4
2464 Female, age 72, unknown 31.6
1831 Male, age 72, unknown 23.0
1840 Male, age 53, unknown 20.7
2850 Male, age 76, both hemispheres 18.3
Periaquaductal grey, lateral
nTPM: 26.1
2053 Male, age 18, unknown 28.7
2272 Male, age 74, both hemispheres 28.6
2140 Male, age 76, both hemispheres 21.2
Pretectal area
nTPM: 30.1
2316 Male, age 76, right hemisphere 36.0
1815 Male, age 53, unknown 35.3
2007 Male, age 72, unknown 34.8
1817 Female, age 42, unknown 32.3
2407 Male, age 75, both hemispheres 29.8
2273 Male, age 74, both hemispheres 29.5
2224 Female, age 72, unknown 28.7
2825 Male, age 18, unknown 27.8
2667 Female, age 75, unknown 27.0
1944 Female, age 72, unknown 26.5
1816 Male, age 51, unknown 24.1
Red nucleus
nTPM: 42.6
1865 Male, age 51, unknown 53.7
1904 Male, age 53, unknown 49.2
1821 Female, age 72, unknown 46.8
2785 Male, age 18, unknown 45.6
2503 Female, age 72, unknown 45.5
1954 Female, age 42, unknown 43.6
2227 Male, age 72, unknown 43.5
2769 Male, age 72, unknown 43.5
2823 Male, age 76, right hemisphere 38.3
2588 Male, age 74, left hemisphere 35.2
2725 Female, age 75, unknown 34.3
2584 Male, age 75, left hemisphere 32.3
Substantia nigra
nTPM: 30.0
2583 Male, age 75, right hemisphere 37.0
1851 Male, age 51, unknown 35.8
2409 Female, age 72, unknown 34.2
2241 Male, age 72, unknown 32.8
1889 Female, age 72, unknown 32.4
2590 Female, age 75, unknown 29.5
1916 Female, age 42, unknown 26.7
2699 Male, age 18, unknown 26.0
1941 Male, age 53, unknown 25.1
2665 Male, age 74, both hemispheres 20.7
Superior colliculus
nTPM: 35.5
1913 Female, age 42, unknown 47.3
1995 Male, age 72, unknown 45.4
1895 Male, age 76, right hemisphere 40.8
2587 Male, age 74, left hemisphere 38.7
2668 Female, age 75, unknown 38.5
1839 Male, age 51, unknown 33.3
1796 Male, age 53, unknown 30.9
2087 Female, age 72, unknown 28.1
2261 Male, age 18, unknown 28.1
2664 Male, age 75, both hemispheres 23.4
Ventral tegmental area
nTPM: 31.6
2410 Female, age 72, unknown 38.9
2223 Female, age 72, unknown 34.8
1915 Female, age 42, unknown 30.6
2021 Male, age 53, unknown 30.4
1942 Male, age 51, unknown 29.2
2218 Male, age 76, both hemispheres 26.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 183

Max nTPM: 54.8
Min nTPM: 5.6
Std nTPM: 8.0
Median nTPM: 14.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 54.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 49.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 37.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 36.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 33.9
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 32.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 31.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 31.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.4
FF:10158-103A5 76 years, female 125.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.8
Samples: 4

Max nTPM: 47.6
Min nTPM: 27.8
Sample A Female 47.6
Sample B Female 27.8
Sample C Male 29.1
Sample D Male 46.5
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 60.1
Min nTPM: 30.7
Sample A Female 60.1
Sample B Female 39.7
Sample C Male 34.3
Sample D Male 30.7
Periaqueductal gray
nTPM: 34.3
Samples: 3

Max nTPM: 37.7
Min nTPM: 28.2
Sample B Female 37.7
Sample C Male 28.2
Sample D Male 37.1
Superior colliculi
nTPM: 36.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 26.7
Sample A Female 42.4
Sample B Female 26.7
Sample C Male 37.3
Sample D Male 39.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 53.1
Min nTPM: 45.8
Sample A Male 45.8
Sample B Male 47.8
Sample C Female 53.1
Sample D Female 48.7

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