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  • ARHGAP21
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:74.7 nTPM
HPA Brain:154.2 nTPM
GTEx:74.7 nTPM
FANTOM5:192.9 Scaled Tags Per Million
Pig:83.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 140.4
2048 Male, age 55, midline 161.1
2816 Male, age 47, midline 146.1
1981 Female, age 72, midline 141.0
2194 Female, age 79, both hemispheres 130.4
2565 Male, age 75, midline 123.6
Cervical spinal cord, dorsal horn
nTPM: 142.9
2296 Male, age 66, both hemispheres 186.0
2173 Female, age 72, unknown 171.9
2069 Male, age 47, both hemispheres 139.0
1877 Male, age 55, unknown 137.4
2721 Male, age 90, both hemispheres 112.0
2297 Male, age 75, both hemispheres 110.9
Cervical spinal cord, ventral horn
nTPM: 154.2
2480 Male, age 75, both hemispheres 180.5
2809 Male, age 90, both hemispheres 152.3
2295 Male, age 66, both hemispheres 151.9
2068 Male, age 55, unknown 151.5
2098 Female, age 72, unknown 148.9
2820 Female, age 79, both hemispheres 139.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 74.7
Samples: 204

Max nTPM: 149.0
Min nTPM: 15.9
Std nTPM: 23.1
Median nTPM: 74.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 149.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 144.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 139.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 136.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 135.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 126.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 126.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 121.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 120.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 119.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 116.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 112.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 111.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 110.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 109.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 105.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 103.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 103.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 101.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 100.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 99.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 99.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 97.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 96.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 96.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 96.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 96.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 94.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 94.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 94.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 93.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 93.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 93.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 93.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 93.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 92.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 91.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 91.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 90.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 90.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 89.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 89.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 89.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 89.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 89.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 89.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 88.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 88.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 87.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 87.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 86.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 86.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 84.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 84.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 84.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 84.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 83.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 83.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 83.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 83.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 83.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 83.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 83.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 83.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 83.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 82.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 82.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 82.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 82.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 82.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 81.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 81.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 81.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 80.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 80.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 80.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 80.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 80.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 80.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 79.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 79.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 79.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 78.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 78.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 78.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 78.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 78.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 77.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 77.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 77.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 76.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 76.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 76.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 76.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 75.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 75.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 74.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 74.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 74.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 74.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 74.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 74.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 74.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 73.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 73.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 73.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 73.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 73.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 73.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 73.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 72.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 72.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 72.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 72.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 72.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 72.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 71.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 71.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 71.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 71.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 70.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 69.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 69.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 69.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 69.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 69.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 68.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 67.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 66.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 66.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 66.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 66.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 65.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 65.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 65.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 64.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 64.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 63.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 63.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 62.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 62.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 62.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 62.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 61.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 61.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 60.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 60.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 59.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 59.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 59.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 59.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 59.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 59.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 58.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 57.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 57.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 57.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 57.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 56.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 56.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 56.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 56.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 56.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 54.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 54.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 54.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 54.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 54.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 52.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 51.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 51.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 50.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 49.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 49.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 48.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 47.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 47.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 46.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 44.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 43.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 42.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 42.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 40.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 39.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 39.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 39.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 38.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 37.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 37.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 36.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 31.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 31.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 30.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 30.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 29.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 29.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 22.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 22.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 15.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 192.9
FF:10159-103A6 76 years, female 213.6
FF:10181-103D1 60 years, female 172.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.6
Samples: 4

Max nTPM: 87.4
Min nTPM: 64.7
Sample A Female 77.9
Sample B Female 72.5
Sample C Male 64.7
Sample D Male 87.4
Ventral spinal cord
nTPM: 83.4
Samples: 4

Max nTPM: 91.8
Min nTPM: 75.5
Sample A Female 90.1
Sample B Female 75.5
Sample C Male 76.1
Sample D Male 91.8

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