A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.1
nTPM
Monaco:
49.6
nTPM
Schmiedel:
26.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.1
HPA sample
nTPM
NK-cell nTPM: 12.1
Samples: 6
Max nTPM: 20.9
Min nTPM: 7.4
P10809_1013
10.3
P10809_1033
8.5
P10809_1052
17.0
P10809_1071
7.4
P10809_1093
8.3
P10809_1103
20.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.6
Monaco sample
nTPM
NK-cell nTPM: 49.7
Samples: 4
Max nTPM: 59.0
Min nTPM: 42.7
RHH5316_R3683
49.6
RHH5224_R3596
42.7
RHH5253_R3625
59.0
RHH5282_R3654
47.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.6
Schmiedel sample id
TPM
NK-cell TPM: 26.6
Samples: 90
Max TPM: 46.8
Min TPM: 17.1
NK_1
46.8
NK_2
39.1
NK_3
39.0
NK_4
38.9
NK_5
38.2
NK_6
36.5
NK_7
36.4
NK_8
35.9
NK_9
34.3
NK_10
33.9
NK_11
33.4
NK_12
33.3
NK_13
32.5
NK_14
32.2
NK_15
32.2
NK_16
31.8
NK_17
31.4
NK_18
30.9
NK_19
30.9
NK_20
30.8
NK_21
30.4
NK_22
30.4
NK_23
30.3
NK_24
30.3
NK_25
29.9
NK_26
29.8
NK_27
29.1
NK_28
29.1
NK_29
28.9
NK_30
28.3
NK_31
27.6
NK_32
27.6
NK_33
27.3
NK_34
27.2
NK_35
27.0
NK_36
26.9
NK_37
26.8
NK_38
26.7
NK_39
26.5
NK_40
26.4
NK_41
26.2
NK_42
26.2
NK_43
26.0
NK_44
25.8
NK_45
25.8
NK_46
25.5
NK_47
25.4
NK_48
25.3
NK_49
25.2
NK_50
25.2
NK_51
25.1
NK_52
24.9
NK_53
24.5
NK_54
24.5
NK_55
24.3
NK_56
24.3
NK_57
24.1
NK_58
23.9
NK_59
23.8
NK_60
23.7
NK_61
23.6
NK_62
23.5
NK_63
23.3
NK_64
22.6
NK_65
22.5
NK_66
22.4
NK_67
22.3
NK_68
22.1
NK_69
22.0
NK_70
21.7
NK_71
21.6
NK_72
21.4
NK_73
21.4
NK_74
21.1
NK_75
20.9
NK_76
20.7
NK_77
20.6
NK_78
20.6
NK_79
20.5
NK_80
20.3
NK_81
20.3
NK_82
19.9
NK_83
19.9
NK_84
19.8
NK_85
19.8
NK_86
19.0
NK_87
18.9
NK_88
18.5
NK_89
18.0
NK_90
17.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.