A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.4
nTPM
Monaco:
59.3
nTPM
Schmiedel:
22.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
HPA sample
nTPM
Classical monocyte nTPM: 12.0
Samples: 6
Max nTPM: 13.6
Min nTPM: 11.2
P10809_1003
12.1
P10809_1020
12.7
P10809_1039
13.6
P10809_1058
11.2
P10809_1080
11.3
P10809_1107
11.4
Intermediate monocyte nTPM: 12.2
Samples: 6
Max nTPM: 14.3
Min nTPM: 6.4
P10809_1004
13.5
P10809_1023
6.4
P10809_1042
14.3
P10809_1061
14.3
P10809_1081
11.9
P10809_1108
12.9
Non-classical monocyte nTPM: 14.4
Samples: 5
Max nTPM: 29.0
Min nTPM: 7.8
P10809_1005
11.4
P10809_1053
12.5
P10809_1072
29.0
P10809_1082
11.4
P10809_1109
7.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.3
Monaco sample
nTPM
Classical monocyte nTPM: 59.3
Samples: 4
Max nTPM: 64.7
Min nTPM: 56.2
RHH5313_R3680
56.2
RHH5221_R3593
56.5
RHH5250_R3622
64.7
RHH5279_R3651
59.7
Intermediate monocyte nTPM: 49.1
Samples: 4
Max nTPM: 55.1
Min nTPM: 41.0
RHH5314_R3681
41.0
RHH5222_R3594
55.1
RHH5251_R3623
46.1
RHH5280_R3652
54.0
Non-classical monocyte nTPM: 50.4
Samples: 4
Max nTPM: 58.0
Min nTPM: 44.8
RHH5315_R3682
50.3
RHH5223_R3595
48.6
RHH5252_R3624
44.8
RHH5281_R3653
58.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.3
Schmiedel sample id
TPM
Classical monocyte TPM: 18.4
Samples: 91
Max TPM: 23.7
Min TPM: 13.1
MONOCYTES_1
23.7
MONOCYTES_2
22.6
MONOCYTES_3
22.5
MONOCYTES_4
22.1
MONOCYTES_5
22.0
MONOCYTES_6
21.9
MONOCYTES_7
21.8
MONOCYTES_8
21.5
MONOCYTES_9
21.4
MONOCYTES_10
21.3
MONOCYTES_11
21.3
MONOCYTES_12
21.1
MONOCYTES_13
20.8
MONOCYTES_14
20.7
MONOCYTES_15
20.5
MONOCYTES_16
20.5
MONOCYTES_17
20.4
MONOCYTES_18
20.3
MONOCYTES_19
20.2
MONOCYTES_20
20.1
MONOCYTES_21
20.1
MONOCYTES_22
20.1
MONOCYTES_23
20.0
MONOCYTES_24
19.9
MONOCYTES_25
19.6
MONOCYTES_26
19.4
MONOCYTES_27
19.3
MONOCYTES_28
19.3
MONOCYTES_29
19.2
MONOCYTES_30
19.2
MONOCYTES_31
19.2
MONOCYTES_32
19.1
MONOCYTES_33
19.1
MONOCYTES_34
19.1
MONOCYTES_35
19.0
MONOCYTES_36
18.9
MONOCYTES_37
18.9
MONOCYTES_38
18.8
MONOCYTES_39
18.8
MONOCYTES_40
18.7
MONOCYTES_41
18.7
MONOCYTES_42
18.7
MONOCYTES_43
18.7
MONOCYTES_44
18.5
MONOCYTES_45
18.5
MONOCYTES_46
18.4
MONOCYTES_47
18.3
MONOCYTES_48
18.2
MONOCYTES_49
18.1
MONOCYTES_50
18.1
MONOCYTES_51
18.0
MONOCYTES_52
17.9
MONOCYTES_53
17.8
MONOCYTES_54
17.7
MONOCYTES_55
17.7
MONOCYTES_56
17.6
MONOCYTES_57
17.6
MONOCYTES_58
17.5
MONOCYTES_59
17.5
MONOCYTES_60
17.4
MONOCYTES_61
17.4
MONOCYTES_62
17.3
MONOCYTES_63
17.3
MONOCYTES_64
17.3
MONOCYTES_65
17.3
MONOCYTES_66
17.3
MONOCYTES_67
17.0
MONOCYTES_68
17.0
MONOCYTES_69
16.9
MONOCYTES_70
16.9
MONOCYTES_71
16.8
MONOCYTES_72
16.7
MONOCYTES_73
16.6
MONOCYTES_74
16.4
MONOCYTES_75
16.4
MONOCYTES_76
16.3
MONOCYTES_77
16.2
MONOCYTES_78
16.0
MONOCYTES_79
15.8
MONOCYTES_80
15.8
MONOCYTES_81
15.8
MONOCYTES_82
15.7
MONOCYTES_83
15.6
MONOCYTES_84
15.5
MONOCYTES_85
15.2
MONOCYTES_86
14.9
MONOCYTES_87
14.8
MONOCYTES_88
14.7
MONOCYTES_89
13.8
MONOCYTES_90
13.3
MONOCYTES_91
13.1
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Non-classical monocyte TPM: 22.3
Samples: 90
Max TPM: 32.9
Min TPM: 12.3
M2_1
32.9
M2_2
31.5
M2_3
31.4
M2_4
29.1
M2_5
28.9
M2_6
28.2
M2_7
27.9
M2_8
27.8
M2_9
27.5
M2_10
27.3
M2_11
27.2
M2_12
27.0
M2_13
26.6
M2_14
26.5
M2_15
26.3
M2_16
26.0
M2_17
25.6
M2_18
25.3
M2_19
24.7
M2_20
24.5
M2_21
24.5
M2_22
23.9
M2_23
23.9
M2_24
23.6
M2_25
23.6
M2_26
23.4
M2_27
23.3
M2_28
23.1
M2_29
23.1
M2_30
23.0
M2_31
23.0
M2_32
22.9
M2_33
22.9
M2_34
22.9
M2_35
22.8
M2_36
22.8
M2_37
22.8
M2_38
22.7
M2_39
22.5
M2_40
22.5
M2_41
22.2
M2_42
22.2
M2_43
22.2
M2_44
22.2
M2_45
22.1
M2_46
22.0
M2_47
21.9
M2_48
21.9
M2_49
21.8
M2_50
21.6
M2_51
21.5
M2_52
21.3
M2_53
21.1
M2_54
20.8
M2_55
20.8
M2_56
20.7
M2_57
20.7
M2_58
20.7
M2_59
20.6
M2_60
20.6
M2_61
20.5
M2_62
20.5
M2_63
20.4
M2_64
20.4
M2_65
20.2
M2_66
20.1
M2_67
20.0
M2_68
20.0
M2_69
20.0
M2_70
20.0
M2_71
19.9
M2_72
19.9
M2_73
19.8
M2_74
19.8
M2_75
19.7
M2_76
19.5
M2_77
18.7
M2_78
18.6
M2_79
18.5
M2_80
18.4
M2_81
18.2
M2_82
18.1
M2_83
18.0
M2_84
17.9
M2_85
17.6
M2_86
17.0
M2_87
17.0
M2_88
16.9
M2_89
16.4
M2_90
12.3
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