MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.7 nTPM
HPA Brain:27.8 nTPM
GTEx:48.7 nTPM
FANTOM5:48.1 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:24.4 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
2586 Male, age 75, left hemisphere 33.0
2411 Female, age 72, unknown 32.2
1827 Male, age 72, unknown 31.8
2828 Female, age 72, unknown 26.0
1870 Female, age 42, unknown 24.8
2019 Male, age 18, unknown 24.0
1833 Male, age 53, unknown 22.8
2219 Male, age 76, both hemispheres 22.7
1830 Male, age 51, unknown 21.0
2666 Male, age 74, left hemisphere 18.0
Dorsal raphe nucleus
nTPM: 26.3
2298 Female, age 72, unknown 29.9
2047 Male, age 72, unknown 29.7
2016 Female, age 72, unknown 25.0
1828 Male, age 53, unknown 23.8
2750 Male, age 76, both hemispheres 23.3
Inferior colliculus
nTPM: 23.9
1890 Male, age 53, unknown 25.8
2097 Female, age 72, unknown 25.8
2849 Male, age 72, unknown 23.0
1848 Female, age 42, unknown 21.0
Median raphe nucleus
nTPM: 25.1
2220 Male, age 76, midline 25.1
Periaquaductal grey, anterior
nTPM: 27.8
1795 Male, age 51, unknown 30.6
1947 Male, age 18, unknown 28.8
2502 Female, age 75, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 26.2
1840 Male, age 53, unknown 28.0
1831 Male, age 72, unknown 27.2
2850 Male, age 76, both hemispheres 25.6
2464 Female, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 26.8
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 27.2
2140 Male, age 76, both hemispheres 26.1
Pretectal area
nTPM: 24.2
2825 Male, age 18, unknown 28.6
2273 Male, age 74, both hemispheres 26.6
2407 Male, age 75, both hemispheres 24.6
2007 Male, age 72, unknown 24.2
1816 Male, age 51, unknown 23.7
2224 Female, age 72, unknown 23.6
1817 Female, age 42, unknown 23.3
1815 Male, age 53, unknown 23.1
2316 Male, age 76, right hemisphere 23.0
2667 Female, age 75, unknown 23.0
1944 Female, age 72, unknown 22.1
Red nucleus
nTPM: 25.5
2588 Male, age 74, left hemisphere 29.4
1954 Female, age 42, unknown 28.5
2584 Male, age 75, left hemisphere 28.0
2769 Male, age 72, unknown 26.6
2503 Female, age 72, unknown 26.5
2725 Female, age 75, unknown 26.3
1904 Male, age 53, unknown 25.0
1821 Female, age 72, unknown 24.6
1865 Male, age 51, unknown 24.4
2227 Male, age 72, unknown 23.1
2785 Male, age 18, unknown 21.8
2823 Male, age 76, right hemisphere 21.5
Substantia nigra
nTPM: 24.0
2590 Female, age 75, unknown 30.1
1916 Female, age 42, unknown 29.9
1851 Male, age 51, unknown 28.1
2699 Male, age 18, unknown 24.3
2583 Male, age 75, right hemisphere 23.5
2409 Female, age 72, unknown 23.4
1941 Male, age 53, unknown 21.7
1889 Female, age 72, unknown 20.6
2665 Male, age 74, both hemispheres 20.4
2241 Male, age 72, unknown 17.6
Superior colliculus
nTPM: 25.2
2664 Male, age 75, both hemispheres 34.9
1796 Male, age 53, unknown 30.7
2587 Male, age 74, left hemisphere 24.7
1995 Male, age 72, unknown 24.0
1913 Female, age 42, unknown 23.7
2261 Male, age 18, unknown 23.6
2087 Female, age 72, unknown 23.2
1839 Male, age 51, unknown 22.9
2668 Female, age 75, unknown 22.8
1895 Male, age 76, right hemisphere 21.3
Ventral tegmental area
nTPM: 25.2
1915 Female, age 42, unknown 28.7
2410 Female, age 72, unknown 26.9
1942 Male, age 51, unknown 26.3
2021 Male, age 53, unknown 24.7
2218 Male, age 76, both hemispheres 23.7
2223 Female, age 72, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.7
Samples: 183

Max nTPM: 150.0
Min nTPM: 26.0
Std nTPM: 14.6
Median nTPM: 46.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 150.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 104.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 90.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 89.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 82.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 80.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 80.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 79.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 77.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 76.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 76.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.1
FF:10158-103A5 76 years, female 48.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.9
Samples: 4

Max nTPM: 32.8
Min nTPM: 21.0
Sample A Female 32.8
Sample B Female 21.0
Sample C Male 22.5
Sample D Male 23.2
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 53.2
Min nTPM: 13.7
Sample A Female 53.2
Sample B Female 25.4
Sample C Male 16.4
Sample D Male 13.7
Periaqueductal gray
nTPM: 20.6
Samples: 3

Max nTPM: 25.8
Min nTPM: 14.4
Sample B Female 25.8
Sample C Male 21.6
Sample D Male 14.4
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 30.6
Min nTPM: 18.3
Sample A Female 30.6
Sample B Female 22.1
Sample C Male 21.1
Sample D Male 18.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 25.0
Min nTPM: 23.2
Sample A Male 24.8
Sample B Male 23.2
Sample C Female 24.4
Sample D Female 25.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69080011 Antisense, RP_050324_01_C11, Mouse strain C57BL/6J (56 days, male) 1.8

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