A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
119.1
nTPM
Monaco:
221.9
nTPM
Schmiedel:
253.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
119.1
HPA sample
nTPM
NK-cell nTPM: 119.1
Samples: 6
Max nTPM: 152.4
Min nTPM: 76.0
P10809_1013
76.0
P10809_1033
135.0
P10809_1052
147.8
P10809_1071
152.4
P10809_1093
102.1
P10809_1103
101.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
221.9
Monaco sample
nTPM
NK-cell nTPM: 222.0
Samples: 4
Max nTPM: 253.4
Min nTPM: 177.1
RHH5316_R3683
242.5
RHH5224_R3596
253.4
RHH5253_R3625
177.1
RHH5282_R3654
214.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
253.9
Schmiedel sample id
TPM
NK-cell TPM: 253.9
Samples: 90
Max TPM: 324.2
Min TPM: 153.5
NK_1
324.2
NK_2
321.0
NK_3
317.2
NK_4
310.2
NK_5
307.5
NK_6
306.7
NK_7
306.1
NK_8
306.0
NK_9
304.8
NK_10
303.7
NK_11
303.7
NK_12
299.7
NK_13
295.6
NK_14
295.1
NK_15
294.9
NK_16
293.2
NK_17
292.7
NK_18
291.9
NK_19
291.1
NK_20
288.9
NK_21
288.5
NK_22
285.0
NK_23
282.1
NK_24
281.4
NK_25
280.4
NK_26
280.1
NK_27
278.7
NK_28
277.4
NK_29
276.6
NK_30
276.2
NK_31
275.2
NK_32
273.3
NK_33
273.0
NK_34
272.8
NK_35
271.4
NK_36
271.3
NK_37
266.8
NK_38
260.5
NK_39
259.3
NK_40
257.4
NK_41
257.2
NK_42
256.4
NK_43
256.1
NK_44
254.7
NK_45
254.2
NK_46
254.1
NK_47
251.8
NK_48
251.5
NK_49
251.5
NK_50
251.2
NK_51
249.5
NK_52
247.4
NK_53
246.9
NK_54
246.7
NK_55
245.1
NK_56
243.9
NK_57
243.5
NK_58
239.2
NK_59
239.2
NK_60
239.0
NK_61
238.1
NK_62
236.9
NK_63
236.6
NK_64
235.8
NK_65
235.2
NK_66
234.7
NK_67
227.7
NK_68
227.2
NK_69
226.4
NK_70
225.5
NK_71
225.4
NK_72
224.7
NK_73
223.9
NK_74
222.1
NK_75
218.5
NK_76
216.4
NK_77
215.2
NK_78
209.9
NK_79
209.4
NK_80
205.9
NK_81
205.8
NK_82
202.0
NK_83
197.7
NK_84
195.7
NK_85
194.7
NK_86
175.0
NK_87
172.5
NK_88
170.5
NK_89
168.3
NK_90
153.5
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