A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
118.3
nTPM
Monaco:
163.5
nTPM
Schmiedel:
127.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.3
HPA sample
nTPM
Classical monocyte nTPM: 89.0
Samples: 6
Max nTPM: 99.4
Min nTPM: 76.4
P10809_1003
95.1
P10809_1020
99.4
P10809_1039
93.8
P10809_1058
76.4
P10809_1080
80.3
P10809_1107
88.8
Intermediate monocyte nTPM: 94.1
Samples: 6
Max nTPM: 109.5
Min nTPM: 73.2
P10809_1004
96.8
P10809_1023
94.6
P10809_1042
109.5
P10809_1061
93.3
P10809_1081
73.2
P10809_1108
97.2
Non-classical monocyte nTPM: 118.3
Samples: 5
Max nTPM: 157.4
Min nTPM: 85.1
P10809_1005
112.1
P10809_1053
125.4
P10809_1072
157.4
P10809_1082
85.1
P10809_1109
111.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.5
Monaco sample
nTPM
Classical monocyte nTPM: 134.8
Samples: 4
Max nTPM: 137.7
Min nTPM: 132.9
RHH5313_R3680
132.9
RHH5221_R3593
137.7
RHH5250_R3622
135.0
RHH5279_R3651
133.4
Intermediate monocyte nTPM: 145.8
Samples: 4
Max nTPM: 166.6
Min nTPM: 124.6
RHH5314_R3681
131.1
RHH5222_R3594
124.6
RHH5251_R3623
166.6
RHH5280_R3652
160.8
Non-classical monocyte nTPM: 163.6
Samples: 4
Max nTPM: 192.4
Min nTPM: 119.6
RHH5315_R3682
183.5
RHH5223_R3595
119.6
RHH5252_R3624
158.7
RHH5281_R3653
192.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.5
Schmiedel sample id
TPM
Classical monocyte TPM: 96.2
Samples: 91
Max TPM: 114.2
Min TPM: 73.2
MONOCYTES_1
114.2
MONOCYTES_2
112.5
MONOCYTES_3
110.8
MONOCYTES_4
110.3
MONOCYTES_5
108.1
MONOCYTES_6
108.1
MONOCYTES_7
107.8
MONOCYTES_8
107.4
MONOCYTES_9
106.9
MONOCYTES_10
106.8
MONOCYTES_11
106.6
MONOCYTES_12
106.4
MONOCYTES_13
106.1
MONOCYTES_14
105.4
MONOCYTES_15
105.3
MONOCYTES_16
105.2
MONOCYTES_17
105.1
MONOCYTES_18
104.5
MONOCYTES_19
104.1
MONOCYTES_20
103.6
MONOCYTES_21
103.5
MONOCYTES_22
103.2
MONOCYTES_23
103.0
MONOCYTES_24
102.5
MONOCYTES_25
102.3
MONOCYTES_26
102.2
MONOCYTES_27
102.1
MONOCYTES_28
101.9
MONOCYTES_29
101.8
MONOCYTES_30
101.4
MONOCYTES_31
101.2
MONOCYTES_32
100.9
MONOCYTES_33
100.1
MONOCYTES_34
100.0
MONOCYTES_35
99.9
MONOCYTES_36
99.9
MONOCYTES_37
99.9
MONOCYTES_38
99.7
MONOCYTES_39
99.3
MONOCYTES_40
99.1
MONOCYTES_41
98.9
MONOCYTES_42
98.8
MONOCYTES_43
98.7
MONOCYTES_44
98.5
MONOCYTES_45
98.4
MONOCYTES_46
97.7
MONOCYTES_47
97.7
MONOCYTES_48
97.6
MONOCYTES_49
97.5
MONOCYTES_50
97.5
MONOCYTES_51
96.9
MONOCYTES_52
96.5
MONOCYTES_53
96.5
MONOCYTES_54
95.9
MONOCYTES_55
95.3
MONOCYTES_56
95.1
MONOCYTES_57
94.8
MONOCYTES_58
94.3
MONOCYTES_59
93.6
MONOCYTES_60
93.6
MONOCYTES_61
93.6
MONOCYTES_62
93.3
MONOCYTES_63
92.7
MONOCYTES_64
92.6
MONOCYTES_65
92.3
MONOCYTES_66
91.6
MONOCYTES_67
91.1
MONOCYTES_68
89.5
MONOCYTES_69
88.4
MONOCYTES_70
88.4
MONOCYTES_71
87.6
MONOCYTES_72
87.4
MONOCYTES_73
87.2
MONOCYTES_74
86.7
MONOCYTES_75
86.4
MONOCYTES_76
86.1
MONOCYTES_77
85.5
MONOCYTES_78
85.2
MONOCYTES_79
85.2
MONOCYTES_80
85.1
MONOCYTES_81
84.9
MONOCYTES_82
84.4
MONOCYTES_83
84.1
MONOCYTES_84
80.7
MONOCYTES_85
80.6
MONOCYTES_86
80.2
MONOCYTES_87
78.3
MONOCYTES_88
77.2
MONOCYTES_89
77.0
MONOCYTES_90
76.3
MONOCYTES_91
73.2
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Non-classical monocyte TPM: 127.5
Samples: 90
Max TPM: 168.2
Min TPM: 78.1
M2_1
168.2
M2_2
159.5
M2_3
158.4
M2_4
154.9
M2_5
150.9
M2_6
150.9
M2_7
149.4
M2_8
147.0
M2_9
147.0
M2_10
146.2
M2_11
146.2
M2_12
145.6
M2_13
143.4
M2_14
143.2
M2_15
143.1
M2_16
143.1
M2_17
142.9
M2_18
142.1
M2_19
141.9
M2_20
141.1
M2_21
140.9
M2_22
139.8
M2_23
138.5
M2_24
137.3
M2_25
136.2
M2_26
135.4
M2_27
135.2
M2_28
134.5
M2_29
133.9
M2_30
133.8
M2_31
133.8
M2_32
133.6
M2_33
133.3
M2_34
133.1
M2_35
132.2
M2_36
131.8
M2_37
131.4
M2_38
131.3
M2_39
131.3
M2_40
130.9
M2_41
130.7
M2_42
130.5
M2_43
130.3
M2_44
129.4
M2_45
129.3
M2_46
128.5
M2_47
128.5
M2_48
128.1
M2_49
127.7
M2_50
126.7
M2_51
126.6
M2_52
124.6
M2_53
124.6
M2_54
124.6
M2_55
124.4
M2_56
124.2
M2_57
123.7
M2_58
123.6
M2_59
123.3
M2_60
122.7
M2_61
122.7
M2_62
122.5
M2_63
120.8
M2_64
120.6
M2_65
120.4
M2_66
120.2
M2_67
120.0
M2_68
120.0
M2_69
118.9
M2_70
117.7
M2_71
117.4
M2_72
117.1
M2_73
117.1
M2_74
116.2
M2_75
114.8
M2_76
114.5
M2_77
111.2
M2_78
110.6
M2_79
107.5
M2_80
106.6
M2_81
104.6
M2_82
102.6
M2_83
102.0
M2_84
100.7
M2_85
99.4
M2_86
97.3
M2_87
94.9
M2_88
89.9
M2_89
79.9
M2_90
78.1
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