MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.9 nTPM
HPA Brain:149.5 nTPM
GTEx:86.9 nTPM
FANTOM5:143.8 Scaled Tags Per Million
Pig:35.8 nTPM
Mouse:19.8 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 149.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.4
2411 Female, age 72, unknown 162.0
1870 Female, age 42, unknown 161.3
1833 Male, age 53, unknown 147.7
1830 Male, age 51, unknown 142.1
2019 Male, age 18, unknown 129.2
2828 Female, age 72, unknown 113.6
1827 Male, age 72, unknown 92.4
2219 Male, age 76, both hemispheres 84.8
2666 Male, age 74, left hemisphere 83.7
2586 Male, age 75, left hemisphere 76.8
Dorsal raphe nucleus
nTPM: 130.0
2750 Male, age 76, both hemispheres 182.9
1828 Male, age 53, unknown 150.8
2016 Female, age 72, unknown 109.8
2298 Female, age 72, unknown 106.3
2047 Male, age 72, unknown 100.2
Inferior colliculus
nTPM: 88.6
1890 Male, age 53, unknown 96.6
1848 Female, age 42, unknown 95.5
2097 Female, age 72, unknown 89.9
2849 Male, age 72, unknown 72.3
Median raphe nucleus
nTPM: 129.2
2220 Male, age 76, midline 129.2
Periaquaductal grey, anterior
nTPM: 92.9
2502 Female, age 75, unknown 121.0
1795 Male, age 51, unknown 88.3
1947 Male, age 18, unknown 69.6
Periaquaductal grey, dorsal
nTPM: 89.6
1831 Male, age 72, unknown 99.6
2464 Female, age 72, unknown 95.6
2850 Male, age 76, both hemispheres 93.3
1840 Male, age 53, unknown 69.7
Periaquaductal grey, lateral
nTPM: 110.8
2272 Male, age 74, both hemispheres 131.8
2053 Male, age 18, unknown 103.9
2140 Male, age 76, both hemispheres 96.5
Pretectal area
nTPM: 91.3
2273 Male, age 74, both hemispheres 119.8
2224 Female, age 72, unknown 117.2
2825 Male, age 18, unknown 103.7
2316 Male, age 76, right hemisphere 103.5
2667 Female, age 75, unknown 99.8
1815 Male, age 53, unknown 90.4
2007 Male, age 72, unknown 82.6
1817 Female, age 42, unknown 82.5
2407 Male, age 75, both hemispheres 75.4
1944 Female, age 72, unknown 71.1
1816 Male, age 51, unknown 58.3
Red nucleus
nTPM: 149.5
2823 Male, age 76, right hemisphere 179.4
1821 Female, age 72, unknown 169.0
2769 Male, age 72, unknown 169.0
1865 Male, age 51, unknown 167.2
1904 Male, age 53, unknown 165.4
2227 Male, age 72, unknown 165.3
1954 Female, age 42, unknown 151.7
2503 Female, age 72, unknown 145.0
2785 Male, age 18, unknown 132.1
2588 Male, age 74, left hemisphere 125.8
2725 Female, age 75, unknown 122.2
2584 Male, age 75, left hemisphere 102.3
Substantia nigra
nTPM: 112.6
2699 Male, age 18, unknown 162.6
1851 Male, age 51, unknown 139.7
1916 Female, age 42, unknown 138.2
2241 Male, age 72, unknown 124.8
2409 Female, age 72, unknown 115.2
1889 Female, age 72, unknown 103.4
2590 Female, age 75, unknown 103.2
2583 Male, age 75, right hemisphere 90.0
1941 Male, age 53, unknown 88.4
2665 Male, age 74, both hemispheres 60.6
Superior colliculus
nTPM: 95.7
1913 Female, age 42, unknown 131.1
2587 Male, age 74, left hemisphere 119.6
1995 Male, age 72, unknown 116.4
1895 Male, age 76, right hemisphere 108.4
1839 Male, age 51, unknown 101.6
1796 Male, age 53, unknown 91.3
2668 Female, age 75, unknown 79.6
2087 Female, age 72, unknown 78.0
2261 Male, age 18, unknown 73.2
2664 Male, age 75, both hemispheres 58.2
Ventral tegmental area
nTPM: 146.5
2223 Female, age 72, unknown 176.3
2218 Male, age 76, both hemispheres 165.7
2410 Female, age 72, unknown 163.1
1915 Female, age 42, unknown 137.0
2021 Male, age 53, unknown 121.1
1942 Male, age 51, unknown 115.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.9
Samples: 183

Max nTPM: 566.6
Min nTPM: 15.7
Std nTPM: 50.6
Median nTPM: 78.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 566.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 278.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 225.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 213.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 201.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 185.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 185.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 163.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 160.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 157.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 152.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.8
FF:10158-103A5 76 years, female 143.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 25.1
Sample A Female 33.0
Sample B Female 39.8
Sample C Male 25.1
Sample D Male 31.9
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 35.2
Min nTPM: 14.0
Sample A Female 35.2
Sample B Female 18.4
Sample C Male 14.0
Sample D Male 22.1
Periaqueductal gray
nTPM: 22.1
Samples: 3

Max nTPM: 24.9
Min nTPM: 17.4
Sample B Female 17.4
Sample C Male 24.1
Sample D Male 24.9
Superior colliculi
nTPM: 35.8
Samples: 4

Max nTPM: 57.5
Min nTPM: 16.1
Sample A Female 41.7
Sample B Female 57.5
Sample C Male 16.1
Sample D Male 27.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 23.4
Min nTPM: 16.8
Sample A Male 23.4
Sample B Male 21.1
Sample C Female 17.9
Sample D Female 16.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69736088 Antisense, RP_050503_04_B09, Mouse strain C57BL/6J (56 days, male) 0.1

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