MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.8 nTPM
HPA Brain:79.4 nTPM
GTEx:62.8 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:84.4 nTPM
Mouse:26.2 nTPM
Allen mouse:7.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.5
2586 Male, age 75, left hemisphere 103.5
2828 Female, age 72, unknown 98.1
1870 Female, age 42, unknown 76.3
2411 Female, age 72, unknown 69.0
1830 Male, age 51, unknown 68.1
1827 Male, age 72, unknown 66.6
1833 Male, age 53, unknown 66.6
2666 Male, age 74, left hemisphere 62.7
2019 Male, age 18, unknown 62.3
2219 Male, age 76, both hemispheres 61.8
Dorsal raphe nucleus
nTPM: 69.5
2750 Male, age 76, both hemispheres 77.5
2016 Female, age 72, unknown 73.0
1828 Male, age 53, unknown 69.8
2047 Male, age 72, unknown 64.0
2298 Female, age 72, unknown 63.1
Inferior colliculus
nTPM: 60.6
2849 Male, age 72, unknown 67.2
1848 Female, age 42, unknown 65.8
1890 Male, age 53, unknown 57.3
2097 Female, age 72, unknown 52.1
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 73.3
2502 Female, age 75, unknown 75.6
1795 Male, age 51, unknown 75.2
1947 Male, age 18, unknown 69.1
Periaquaductal grey, dorsal
nTPM: 69.7
2850 Male, age 76, both hemispheres 91.0
2464 Female, age 72, unknown 64.5
1840 Male, age 53, unknown 62.6
1831 Male, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 75.0
2140 Male, age 76, both hemispheres 90.3
2053 Male, age 18, unknown 71.0
2272 Male, age 74, both hemispheres 63.5
Pretectal area
nTPM: 67.7
2825 Male, age 18, unknown 75.3
2273 Male, age 74, both hemispheres 75.2
2667 Female, age 75, unknown 74.7
2316 Male, age 76, right hemisphere 74.2
1817 Female, age 42, unknown 69.0
1815 Male, age 53, unknown 67.3
1944 Female, age 72, unknown 64.5
2007 Male, age 72, unknown 63.5
2407 Male, age 75, both hemispheres 60.9
1816 Male, age 51, unknown 60.7
2224 Female, age 72, unknown 59.9
Red nucleus
nTPM: 79.4
2769 Male, age 72, unknown 92.4
2227 Male, age 72, unknown 91.9
1865 Male, age 51, unknown 88.5
2503 Female, age 72, unknown 86.6
2725 Female, age 75, unknown 81.0
1904 Male, age 53, unknown 80.7
2823 Male, age 76, right hemisphere 78.8
1954 Female, age 42, unknown 77.6
1821 Female, age 72, unknown 75.9
2785 Male, age 18, unknown 70.6
2588 Male, age 74, left hemisphere 70.4
2584 Male, age 75, left hemisphere 58.0
Substantia nigra
nTPM: 58.6
2699 Male, age 18, unknown 81.5
1851 Male, age 51, unknown 63.7
2583 Male, age 75, right hemisphere 63.4
1889 Female, age 72, unknown 61.5
1941 Male, age 53, unknown 61.0
2409 Female, age 72, unknown 60.2
1916 Female, age 42, unknown 57.0
2590 Female, age 75, unknown 49.2
2665 Male, age 74, both hemispheres 46.7
2241 Male, age 72, unknown 41.4
Superior colliculus
nTPM: 72.2
1995 Male, age 72, unknown 91.6
1913 Female, age 42, unknown 88.4
1796 Male, age 53, unknown 83.4
2668 Female, age 75, unknown 71.2
2664 Male, age 75, both hemispheres 70.7
2087 Female, age 72, unknown 68.8
2261 Male, age 18, unknown 64.9
1839 Male, age 51, unknown 63.0
1895 Male, age 76, right hemisphere 60.6
2587 Male, age 74, left hemisphere 59.8
Ventral tegmental area
nTPM: 64.7
2223 Female, age 72, unknown 74.7
2218 Male, age 76, both hemispheres 68.1
1942 Male, age 51, unknown 67.7
2021 Male, age 53, unknown 63.5
1915 Female, age 42, unknown 58.6
2410 Female, age 72, unknown 55.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.8
Samples: 183

Max nTPM: 145.8
Min nTPM: 22.9
Std nTPM: 19.2
Median nTPM: 60.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 145.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 137.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 106.0
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 105.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 105.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 104.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 103.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 98.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 97.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 95.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.3
Samples: 4

Max nTPM: 93.6
Min nTPM: 49.6
Sample A Female 74.7
Sample B Female 49.6
Sample C Male 63.2
Sample D Male 93.6
Midbrain
nTPM: 84.4
Samples: 4

Max nTPM: 202.0
Min nTPM: 41.2
Sample A Female 202.0
Sample B Female 50.2
Sample C Male 44.3
Sample D Male 41.2
Periaqueductal gray
nTPM: 46.5
Samples: 3

Max nTPM: 49.3
Min nTPM: 44.9
Sample B Female 45.3
Sample C Male 44.9
Sample D Male 49.3
Superior colliculi
nTPM: 62.5
Samples: 4

Max nTPM: 75.1
Min nTPM: 55.1
Sample A Female 75.1
Sample B Female 55.1
Sample C Male 56.1
Sample D Male 63.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 31.0
Min nTPM: 22.0
Sample A Male 31.0
Sample B Male 26.5
Sample C Female 22.0
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
69874066 Antisense, RP_050512_02_F01, Mouse strain C57BL/6J (56 days, male) 7.3

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