MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.0 nTPM
HPA Brain:14.3 nTPM
GTEx:25.0 nTPM
FANTOM5:60.7 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:54.7 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1833 Male, age 53, unknown 13.7
1870 Female, age 42, unknown 13.1
2411 Female, age 72, unknown 12.9
2828 Female, age 72, unknown 12.4
1827 Male, age 72, unknown 12.2
1830 Male, age 51, unknown 12.1
2586 Male, age 75, left hemisphere 12.1
2666 Male, age 74, left hemisphere 10.7
2019 Male, age 18, unknown 9.8
2219 Male, age 76, both hemispheres 8.8
Dorsal raphe nucleus
nTPM: 12.9
2016 Female, age 72, unknown 13.9
1828 Male, age 53, unknown 12.9
2047 Male, age 72, unknown 12.9
2298 Female, age 72, unknown 12.6
2750 Male, age 76, both hemispheres 12.4
Inferior colliculus
nTPM: 12.5
2097 Female, age 72, unknown 13.2
2849 Male, age 72, unknown 12.7
1848 Female, age 42, unknown 12.3
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 14.3
2220 Male, age 76, midline 14.3
Periaquaductal grey, anterior
nTPM: 10.9
1795 Male, age 51, unknown 11.8
1947 Male, age 18, unknown 11.2
2502 Female, age 75, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 12.5
1840 Male, age 53, unknown 13.2
2464 Female, age 72, unknown 12.9
2850 Male, age 76, both hemispheres 12.2
1831 Male, age 72, unknown 11.6
Periaquaductal grey, lateral
nTPM: 11.4
2053 Male, age 18, unknown 12.3
2272 Male, age 74, both hemispheres 11.3
2140 Male, age 76, both hemispheres 10.4
Pretectal area
nTPM: 11.2
1817 Female, age 42, unknown 13.8
2825 Male, age 18, unknown 13.1
2224 Female, age 72, unknown 12.2
2316 Male, age 76, right hemisphere 12.0
2273 Male, age 74, both hemispheres 11.9
2007 Male, age 72, unknown 11.7
1816 Male, age 51, unknown 10.8
2407 Male, age 75, both hemispheres 10.8
1815 Male, age 53, unknown 10.3
1944 Female, age 72, unknown 9.0
2667 Female, age 75, unknown 7.6
Red nucleus
nTPM: 12.6
1821 Female, age 72, unknown 13.8
2588 Male, age 74, left hemisphere 13.4
2785 Male, age 18, unknown 13.4
2823 Male, age 76, right hemisphere 13.0
1904 Male, age 53, unknown 12.9
2227 Male, age 72, unknown 12.9
2725 Female, age 75, unknown 12.9
1954 Female, age 42, unknown 12.8
2769 Male, age 72, unknown 12.4
2584 Male, age 75, left hemisphere 12.0
2503 Female, age 72, unknown 11.0
1865 Male, age 51, unknown 10.6
Substantia nigra
nTPM: 11.9
2590 Female, age 75, unknown 14.2
2241 Male, age 72, unknown 13.7
2409 Female, age 72, unknown 13.5
1851 Male, age 51, unknown 13.2
2583 Male, age 75, right hemisphere 12.6
1916 Female, age 42, unknown 12.5
2699 Male, age 18, unknown 10.8
2665 Male, age 74, both hemispheres 10.0
1889 Female, age 72, unknown 9.2
1941 Male, age 53, unknown 8.9
Superior colliculus
nTPM: 11.1
1895 Male, age 76, right hemisphere 14.3
2668 Female, age 75, unknown 14.1
2587 Male, age 74, left hemisphere 12.5
1796 Male, age 53, unknown 12.3
1839 Male, age 51, unknown 11.4
2087 Female, age 72, unknown 10.6
2261 Male, age 18, unknown 10.0
1913 Female, age 42, unknown 9.3
1995 Male, age 72, unknown 8.9
2664 Male, age 75, both hemispheres 8.2
Ventral tegmental area
nTPM: 11.6
2218 Male, age 76, both hemispheres 13.0
1915 Female, age 42, unknown 12.1
2021 Male, age 53, unknown 12.1
2410 Female, age 72, unknown 12.1
1942 Male, age 51, unknown 10.8
2223 Female, age 72, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.0
Samples: 183

Max nTPM: 60.1
Min nTPM: 12.2
Std nTPM: 6.3
Median nTPM: 23.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 60.1
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 46.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 43.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 40.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 38.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 38.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 37.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 37.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.7
FF:10158-103A5 76 years, female 60.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 23.6
Min nTPM: 11.3
Sample A Female 23.6
Sample B Female 11.3
Sample C Male 13.1
Sample D Male 12.2
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.5
Sample A Female 20.1
Sample B Female 13.5
Sample C Male 15.8
Sample D Male 17.4
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 14.3
Min nTPM: 11.9
Sample B Female 11.9
Sample C Male 14.3
Sample D Male 13.5
Superior colliculi
nTPM: 17.9
Samples: 4

Max nTPM: 26.4
Min nTPM: 11.7
Sample A Female 26.4
Sample B Female 11.7
Sample C Male 16.2
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.7
Samples: 4

Max nTPM: 60.2
Min nTPM: 48.3
Sample A Male 60.2
Sample B Male 56.9
Sample C Female 48.3
Sample D Female 53.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
73712822 Antisense, RP_051206_02_E01, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo