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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
845.5
Sample id
Sample description
nTPM
Amygdala nTPM: 826.6
2514
Male, age 75, right hemisphere
1004.0
2814
Male, age 76, right hemisphere
1004.0
2695
Female, age 67, right hemisphere
751.9
1987
Female, age 91, left hemisphere
723.8
2517
Female, age 94, left hemisphere
649.5
Basal amygdala nTPM: 753.0
2609
Male, age 75, right hemisphere
1501.8
2243
Female, age 91, right hemisphere
833.0
1955
Male, age 76, both hemispheres
689.2
2110
Male, age 80, left hemisphere
602.9
2685
Female, age 94, left hemisphere
529.7
2827
Female, age 67, right hemisphere
361.6
Central amygdala nTPM: 845.5
2515
Male, age 75, right hemisphere
1046.9
1905
Male, age 76, both hemispheres
1003.6
2701
Female, age 91, right hemisphere
753.7
2239
Male, age 80, left hemisphere
728.0
2826
Female, age 94, left hemisphere
695.5
Corticomedial amygdala nTPM: 779.2
2428
Male, age 75, right hemisphere
1336.5
2242
Female, age 91, right hemisphere
868.5
2429
Female, age 94, left hemisphere
738.7
2829
Male, age 80, left hemisphere
711.6
2240
Male, age 76, both hemispheres
588.6
2535
Female, age 67, right hemisphere
431.2
Lateral amygdala nTPM: 793.6
2516
Male, age 75, right hemisphere
1435.2
1883
Male, age 76, both hemispheres
966.8
2255
Female, age 91, right hemisphere
736.8
2534
Female, age 94, left hemisphere
624.5
2256
Male, age 80, left hemisphere
597.9
2830
Female, age 67, right hemisphere
400.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1055.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 1055.8
Samples: 181
Max nTPM: 2247.8
Min nTPM: 261.9
Std nTPM: 398.2
Median nTPM: 1016.2
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
2247.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
2127.5
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
2084.7
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
2011.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
1925.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
1925.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
1924.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
1923.6
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
1913.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1907.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
1821.4
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
1742.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1728.5
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
1708.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
1659.0
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
1618.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
1612.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1583.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
1567.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1544.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
1518.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
1500.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
1496.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
1489.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1469.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
1455.6
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
1455.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
1438.9
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
1435.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
1421.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
1418.0
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
1417.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1400.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
1393.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
1381.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1370.5
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
1358.9
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
1352.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
1352.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
1337.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1325.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
1313.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
1311.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
1283.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
1280.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
1267.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
1260.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1260.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
1260.1
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
1258.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
1246.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
1239.8
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
1239.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1232.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
1229.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1221.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1221.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
1214.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1207.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
1207.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
1198.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
1196.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
1192.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
1185.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1181.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
1173.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
1167.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1160.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
1156.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
1149.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
1148.9
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
1148.7
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
1145.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
1134.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1130.9
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
1126.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
1108.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
1097.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1093.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1092.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1084.0
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
1083.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
1071.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1067.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1055.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
1033.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
1032.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
1032.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
1029.6
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
1016.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
1016.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1014.6
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
1014.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
1008.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
1004.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
1000.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
999.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
994.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
979.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
978.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
974.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
954.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
949.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
946.2
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
945.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
944.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
942.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
937.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
933.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
932.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
903.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
901.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
894.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
893.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
877.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
873.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
866.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
864.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
860.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
843.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
830.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
817.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
813.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
810.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
808.9
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
807.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
806.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
802.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
792.0
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
788.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
786.5
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
784.3
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
782.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
777.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
777.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
775.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
773.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
768.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
758.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
754.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
743.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
742.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
716.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
712.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
712.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
703.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
695.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
693.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
681.0
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
680.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
673.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
666.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
660.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
659.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
653.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
652.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
647.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
641.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
617.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
605.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
602.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
597.3
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
584.1
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
582.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
580.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
571.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
557.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
551.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
542.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
459.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
455.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
450.9
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
440.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
432.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
418.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
405.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
388.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
371.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
334.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
272.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
261.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
922.2
Pig sample
Sample description
nTPM
Amygdala nTPM: 922.2
Samples: 4
Max nTPM: 1089.6
Min nTPM: 851.4
Sample A
Female
1089.6
Sample B
Female
851.4
Sample C
Male
895.2
Sample D
Male
852.5
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1217.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1217.8
Samples: 4
Max nTPM: 1491.3
Min nTPM: 990.0
Sample A
Male
990.0
Sample B
Male
1154.9
Sample C
Female
1491.3
Sample D
Female
1235.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
