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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:395.9 nTPM
HPA Brain:798.3 nTPM
GTEx:395.9 nTPM
FANTOM5:265.6 Scaled Tags Per Million
Pig:1766.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

798.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 657.5
2194 Female, age 79, both hemispheres 841.8
1981 Female, age 72, midline 838.9
2048 Male, age 55, midline 656.4
2816 Male, age 47, midline 500.3
2565 Male, age 75, midline 450.2
Cervical spinal cord, dorsal horn
nTPM: 680.2
2173 Female, age 72, unknown 1083.6
2721 Male, age 90, both hemispheres 733.8
2297 Male, age 75, both hemispheres 711.3
2069 Male, age 47, both hemispheres 594.0
1877 Male, age 55, unknown 509.0
2296 Male, age 66, both hemispheres 449.5
Cervical spinal cord, ventral horn
nTPM: 798.3
2295 Male, age 66, both hemispheres 1026.9
2068 Male, age 55, unknown 879.7
2820 Female, age 79, both hemispheres 851.0
2480 Male, age 75, both hemispheres 703.8
2809 Male, age 90, both hemispheres 680.5
2098 Female, age 72, unknown 647.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

395.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 395.9
Samples: 204

Max nTPM: 1102.6
Min nTPM: 117.7
Std nTPM: 154.5
Median nTPM: 362.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1102.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 899.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 897.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 865.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 862.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 824.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 799.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 740.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 728.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 726.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 720.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 678.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 644.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 644.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 643.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 617.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 615.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 609.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 606.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 605.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 589.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 588.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 587.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 569.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 568.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 552.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 550.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 548.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 545.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 531.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 529.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 524.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 519.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 518.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 517.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 508.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 508.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 504.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 503.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 499.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 496.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 495.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 493.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 492.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 490.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 488.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 486.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 481.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 479.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 475.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 474.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 466.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 466.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 460.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 459.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 455.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 450.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 450.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 438.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 438.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 436.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 436.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 435.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 434.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 425.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 423.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 422.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 419.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 418.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 416.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 415.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 414.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 414.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 413.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 412.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 410.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 409.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 409.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 409.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 406.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 403.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 398.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 397.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 396.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 396.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 395.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 395.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 394.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 388.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 386.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 385.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 385.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 384.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 381.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 380.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 379.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 378.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 374.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 370.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 366.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 363.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 362.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 361.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 360.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 360.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 359.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 359.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 359.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 352.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 351.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 350.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 349.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 342.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 341.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 341.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 340.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 339.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 339.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 338.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 337.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 334.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 333.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 332.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 330.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 330.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 328.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 325.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 325.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 323.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 323.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 322.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 318.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 314.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 314.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 313.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 313.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 313.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 312.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 305.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 303.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 303.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 301.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 297.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 297.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 296.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 296.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 295.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 295.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 295.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 295.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 293.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 290.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 290.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 289.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 288.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 288.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 287.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 283.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 280.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 279.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 277.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 275.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 274.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 271.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 269.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 268.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 268.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 267.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 262.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 262.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 260.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 260.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 259.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 258.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 256.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 253.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 249.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 249.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 248.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 246.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 245.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 245.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 245.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 243.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 242.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 240.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 240.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 233.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 232.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 232.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 228.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 228.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 223.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 218.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 214.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 211.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 206.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 204.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 200.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 186.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 158.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 146.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 135.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 117.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

265.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 265.6
FF:10181-103D1 60 years, female 399.7
FF:10159-103A6 76 years, female 131.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1766.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1191.8
Samples: 4

Max nTPM: 1332.6
Min nTPM: 991.0
Sample A Female 1327.6
Sample B Female 1116.0
Sample C Male 991.0
Sample D Male 1332.6
Ventral spinal cord
nTPM: 1766.5
Samples: 4

Max nTPM: 1907.9
Min nTPM: 1609.2
Sample A Female 1667.7
Sample B Female 1907.9
Sample C Male 1881.0
Sample D Male 1609.2

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