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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
841.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 802.6
1898
Male, age 80, left hemisphere
965.6
2148
Female, age 91, left hemisphere
827.1
2621
Female, age 67, right hemisphere
821.7
2529
Female, age 94, left hemisphere
801.7
1855
Male, age 76, left hemisphere
704.9
1911
Female, age 85, right hemisphere
694.7
Dentate gyrus nTPM: 705.7
2528
Male, age 74, both hemispheres
910.8
2530
Female, age 94, left hemisphere
760.3
1927
Female, age 91, both hemispheres
731.9
2010
Male, age 76, both hemispheres
713.9
2246
Female, age 85, both hemispheres
706.1
2531
Female, age 67, both hemispheres
411.1
Entorhinal gyrus nTPM: 636.5
2117
Female, age 91, right hemisphere
844.7
1938
Female, age 85, left hemisphere
742.1
2686
Male, age 75, right hemisphere
597.1
2764
Male, age 80, right hemisphere
592.0
1787
Male, age 76, left hemisphere
521.7
2613
Female, age 94, left hemisphere
521.4
Hippocampus, CA1 nTPM: 841.9
2527
Male, age 74, both hemispheres
1106.6
2749
Male, age 80, left hemisphere
1066.2
1873
Female, age 85, both hemispheres
969.9
2082
Female, age 91, right hemisphere
578.0
2045
Male, age 76, both hemispheres
488.6
Hippocampus, CA2 nTPM: 783.9
1963
Male, age 80, left hemisphere
1067.0
2249
Male, age 74, both hemispheres
969.1
1892
Male, age 76, both hemispheres
848.8
2437
Female, age 94, left hemisphere
682.8
2113
Female, age 91, right hemisphere
652.4
1940
Female, age 85, left hemisphere
483.5
Hippocampus, CA3 nTPM: 647.0
2436
Male, age 74, both hemispheres
858.5
2861
Female, age 67, both hemispheres
660.2
1867
Male, age 76, both hemispheres
647.4
1891
Female, age 85, both hemispheres
633.7
2137
Male, age 80, left hemisphere
553.2
2620
Female, age 94, left hemisphere
528.9
Parahippocampal cortex nTPM: 694.4
2622
Female, age 67, right hemisphere
928.5
2692
Male, age 74, both hemispheres
869.2
2250
Female, age 67, right hemisphere
831.4
1933
Female, age 85, both hemispheres
758.1
2245
Female, age 91, both hemispheres
707.7
2693
Female, age 94, both hemispheres
660.8
1990
Female, age 91, right hemisphere
615.9
1850
Male, age 80, both hemispheres
571.6
2532
Female, age 72, left hemisphere
505.7
2018
Male, age 76, both hemispheres
495.0
Perirhinal gyrus nTPM: 610.4
1847
Female, age 91, left hemisphere
775.3
1794
Male, age 80, right hemisphere
660.7
1841
Female, age 85, right hemisphere
640.8
2521
Female, age 94, right hemisphere
550.2
2848
Male, age 76, right hemisphere
425.1
Subiculum nTPM: 659.9
2619
Male, age 74, both hemispheres
919.3
2729
Female, age 91, right hemisphere
819.9
2438
Female, age 94, left hemisphere
643.5
1977
Female, age 85, both hemispheres
603.0
1901
Male, age 80, both hemispheres
509.8
2042
Male, age 76, both hemispheres
464.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
758.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 758.1
Samples: 255
Max nTPM: 1769.9
Min nTPM: 157.9
Std nTPM: 286.7
Median nTPM: 751.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1769.9
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
1566.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1566.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1477.7
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
1474.3
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
1435.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1405.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1361.5
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
1335.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1326.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
1324.5
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
1264.2
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
1254.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
1228.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1228.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1226.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1223.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
1213.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1175.8
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
1167.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1166.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1164.9
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
1163.6
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
1162.8
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
1136.1
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
1127.9
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
1127.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1126.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1121.9
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
1108.4
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
1081.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
1068.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1064.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1061.9
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
1060.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1053.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1052.0
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
1049.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1035.5
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
1030.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1030.1
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
1029.9
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
1023.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1021.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
1007.7
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
1000.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
996.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
996.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
992.8
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
983.0
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
975.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
973.6
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
972.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
970.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
957.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
954.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
947.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
941.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
938.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
933.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
931.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
930.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
929.8
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
926.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
918.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
917.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
917.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
912.2
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
911.9
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
897.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
892.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
887.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
887.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
881.9
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
881.8
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
881.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
880.2
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
876.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
874.9
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
874.6
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
873.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
873.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
866.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
864.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
864.0
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
863.4
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
862.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
856.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
852.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
851.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
850.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
850.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
849.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
848.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
845.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
844.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
843.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
840.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
834.2
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
824.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
819.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
819.5
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
817.0
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
816.1
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
813.0
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
803.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
802.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
801.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
801.8
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
800.2
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
796.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
795.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
793.2
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
793.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
790.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
787.0
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
782.7
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
779.9
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
779.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
778.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
776.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
772.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
771.2
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
757.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
756.0
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
755.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
754.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
751.5
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
751.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
746.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
744.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
740.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
738.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
736.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
735.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
729.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
728.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
726.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
713.0
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
712.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
710.9
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
709.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
706.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
704.4
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
702.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
700.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
699.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
698.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
697.9
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
695.6
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
689.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
689.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
686.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
686.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
684.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
682.8
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
682.7
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
682.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
680.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
680.5
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
678.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
672.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
671.1
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
665.5
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
664.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
663.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
659.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
654.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
650.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
647.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
634.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
627.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
624.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
623.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
622.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
615.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
613.9
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
613.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
612.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
609.4
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
590.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
585.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
579.6
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
577.6
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
573.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
573.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
568.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
565.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
558.8
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
555.4
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
549.8
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
548.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
545.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
537.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
526.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
523.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
519.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
516.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
513.2
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
512.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
511.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
509.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
503.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
495.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
492.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
491.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
486.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
474.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
473.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
472.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
472.8
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
461.5
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
461.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
453.0
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
449.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
449.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
444.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
436.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
432.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
432.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
426.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
425.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
423.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
418.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
417.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
413.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
407.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
403.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
394.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
393.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
387.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
382.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
364.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
361.3
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
360.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
349.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
339.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
337.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
335.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
333.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
326.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
326.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
325.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
313.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
308.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
302.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
300.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
271.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
270.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
244.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
227.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
210.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
204.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
172.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
157.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1123.7
Pig sample
Sample description
nTPM
Subiculum nTPM: 1064.8
Samples: 4
Max nTPM: 1222.0
Min nTPM: 873.7
Sample A
Female
1222.0
Sample B
Female
1082.1
Sample C
Male
1081.3
Sample D
Male
873.7
Dorsal hippocampus nTPM: 1037.8
Samples: 4
Max nTPM: 1282.8
Min nTPM: 878.6
Sample A
Female
1282.8
Sample B
Female
1046.6
Sample C
Male
943.1
Sample D
Male
878.6
Entorhinal cortex nTPM: 1031.5
Samples: 4
Max nTPM: 1184.7
Min nTPM: 866.1
Sample A
Female
1004.4
Sample B
Female
1184.7
Sample C
Male
1070.7
Sample D
Male
866.1
Ventral hippocampus nTPM: 1123.7
Samples: 4
Max nTPM: 1497.1
Min nTPM: 886.0
Sample A
Female
1118.1
Sample B
Female
886.0
Sample C
Male
1497.1
Sample D
Male
993.6
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1114.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1114.2
Samples: 4
Max nTPM: 1285.4
Min nTPM: 950.3
Sample A
Male
1128.0
Sample B
Male
950.3
Sample C
Female
1285.4
Sample D
Female
1093.1
Hippocampal formation nTPM: 1014.3
Samples: 4
Max nTPM: 1174.4
Min nTPM: 882.8
Sample A
Male
1174.4
Sample B
Male
882.8
Sample C
Female
898.7
Sample D
Female
1101.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.