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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ALDOC
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:954.9 nTPM
FANTOM5:438.1 Scaled Tags Per Million
Pig:686.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003282Antibody CAB020828
Glial cells MediumMedium
Neuronal cells Not detectedLow

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

954.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 954.9
Samples: 300

Max nTPM: 2686.4
Min nTPM: 136.6
Std nTPM: 419.2
Median nTPM: 887.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2686.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2418.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 2151.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2144.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2139.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2127.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 2116.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 2113.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 2063.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1908.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1867.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1862.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1828.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1813.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1734.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1707.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1693.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1675.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1667.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1614.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1603.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1601.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1595.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1593.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1576.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1571.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1540.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1529.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1521.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1511.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1499.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1492.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1475.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1471.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1464.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1460.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1441.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1416.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1411.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1391.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1388.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1387.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1370.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1369.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1362.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1353.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1353.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1351.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1347.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1341.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1326.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1326.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1312.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1310.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1302.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1298.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1291.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1289.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1287.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1268.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1266.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1257.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1252.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1230.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1215.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1211.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1210.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1210.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1207.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1191.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1187.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1186.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1182.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1181.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1179.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1171.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1170.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1163.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1149.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1148.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1147.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1145.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1135.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1127.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1122.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1122.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1121.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1120.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1120.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1118.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1114.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1104.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1101.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1096.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1086.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1084.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1084.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1078.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1076.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1074.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1070.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1070.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1068.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1066.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1060.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1060.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1059.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1056.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1054.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1049.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1048.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1047.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1047.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1042.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1032.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1027.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1026.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1025.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1024.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1015.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1010.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1005.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1004.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1000.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 999.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 992.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 991.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 978.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 974.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 972.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 971.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 965.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 960.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 953.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 952.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 948.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 939.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 932.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 931.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 931.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 927.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 915.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 912.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 905.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 903.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 900.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 896.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 894.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 894.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 889.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 884.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 883.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 876.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 867.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 859.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 858.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 857.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 847.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 843.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 842.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 841.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 838.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 834.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 833.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 830.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 820.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 817.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 816.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 813.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 812.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 811.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 803.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 800.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 800.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 799.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 798.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 797.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 792.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 791.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 787.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 786.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 783.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 783.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 779.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 777.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 773.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 771.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 767.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 766.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 758.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 756.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 753.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 752.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 748.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 744.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 743.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 740.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 740.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 738.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 732.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 728.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 728.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 726.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 717.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 715.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 712.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 709.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 695.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 695.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 694.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 693.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 692.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 690.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 688.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 687.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 686.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 683.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 683.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 682.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 682.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 678.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 678.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 676.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 668.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 666.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 664.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 664.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 664.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 657.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 655.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 645.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 641.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 641.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 640.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 629.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 623.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 605.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 601.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 601.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 601.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 591.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 589.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 587.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 584.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 583.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 581.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 573.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 571.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 570.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 569.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 568.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 564.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 559.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 559.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 559.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 556.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 547.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 545.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 542.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 541.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 539.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 537.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 532.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 532.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 528.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 527.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 527.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 526.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 525.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 524.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 518.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 512.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 495.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 485.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 472.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 458.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 456.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 448.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 430.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 427.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 414.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 411.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 406.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 401.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 382.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 380.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 363.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 363.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 363.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 357.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 334.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 319.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 306.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 296.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 267.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 262.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 245.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 231.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 195.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 136.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

438.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 438.1
FF:10164-103B2 76 years, female 438.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

686.7
Pig sample Sample description nTPM
Caudate
nTPM: 686.8
Samples: 4

Max nTPM: 867.4
Min nTPM: 514.9
Sample A Female 514.9
Sample B Female 763.6
Sample C Male 867.4
Sample D Male 601.1

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