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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
Tissue methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

7.743
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:758.1 nTPM
HPA Brain:841.9 nTPM
GTEx:758.1 nTPM
FANTOM5:465.6 Scaled Tags Per Million
Pig:1123.7 nTPM
Mouse:1114.2 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003282Antibody CAB020828
Glial cells MediumMedium
Neuronal cells MediumMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA067442
Hippocampal formation mean intensity 7.743
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 6.181
Molecular layer of the dentate gyrus 4.439
Granular dentate gyrus 7.743
CA1 - oriens layer 0.470
CA1 - pyramidal layer 1.000
CA1 - radiatum layer 0.746
CA2 - oriens layer 0.364
CA2 - pyramidal layer 0.314
CA2 - radiatum layer 1.374
CA3 - oriens layer 1.441
CA3 - pyramidal layer 3.091
CA3 - radiatum layer 1.027
Stratum lucidum 0.617
Lacunosum moleculare 2.856
Subiculum 3.286

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

841.9
Sample id Sample description nTPM
Hippocampus
nTPM: 802.6
1898 Male, age 80, left hemisphere 965.6
2148 Female, age 91, left hemisphere 827.1
2621 Female, age 67, right hemisphere 821.7
2529 Female, age 94, left hemisphere 801.7
1855 Male, age 76, left hemisphere 704.9
1911 Female, age 85, right hemisphere 694.7
Dentate gyrus
nTPM: 705.7
2528 Male, age 74, both hemispheres 910.8
2530 Female, age 94, left hemisphere 760.3
1927 Female, age 91, both hemispheres 731.9
2010 Male, age 76, both hemispheres 713.9
2246 Female, age 85, both hemispheres 706.1
2531 Female, age 67, both hemispheres 411.1
Entorhinal gyrus
nTPM: 636.5
2117 Female, age 91, right hemisphere 844.7
1938 Female, age 85, left hemisphere 742.1
2686 Male, age 75, right hemisphere 597.1
2764 Male, age 80, right hemisphere 592.0
1787 Male, age 76, left hemisphere 521.7
2613 Female, age 94, left hemisphere 521.4
Hippocampus, CA1
nTPM: 841.9
2527 Male, age 74, both hemispheres 1106.6
2749 Male, age 80, left hemisphere 1066.2
1873 Female, age 85, both hemispheres 969.9
2082 Female, age 91, right hemisphere 578.0
2045 Male, age 76, both hemispheres 488.6
Hippocampus, CA2
nTPM: 783.9
1963 Male, age 80, left hemisphere 1067.0
2249 Male, age 74, both hemispheres 969.1
1892 Male, age 76, both hemispheres 848.8
2437 Female, age 94, left hemisphere 682.8
2113 Female, age 91, right hemisphere 652.4
1940 Female, age 85, left hemisphere 483.5
Hippocampus, CA3
nTPM: 647.0
2436 Male, age 74, both hemispheres 858.5
2861 Female, age 67, both hemispheres 660.2
1867 Male, age 76, both hemispheres 647.4
1891 Female, age 85, both hemispheres 633.7
2137 Male, age 80, left hemisphere 553.2
2620 Female, age 94, left hemisphere 528.9
Parahippocampal cortex
nTPM: 694.4
2622 Female, age 67, right hemisphere 928.5
2692 Male, age 74, both hemispheres 869.2
2250 Female, age 67, right hemisphere 831.4
1933 Female, age 85, both hemispheres 758.1
2245 Female, age 91, both hemispheres 707.7
2693 Female, age 94, both hemispheres 660.8
1990 Female, age 91, right hemisphere 615.9
1850 Male, age 80, both hemispheres 571.6
2532 Female, age 72, left hemisphere 505.7
2018 Male, age 76, both hemispheres 495.0
Perirhinal gyrus
nTPM: 610.4
1847 Female, age 91, left hemisphere 775.3
1794 Male, age 80, right hemisphere 660.7
1841 Female, age 85, right hemisphere 640.8
2521 Female, age 94, right hemisphere 550.2
2848 Male, age 76, right hemisphere 425.1
Subiculum
nTPM: 659.9
2619 Male, age 74, both hemispheres 919.3
2729 Female, age 91, right hemisphere 819.9
2438 Female, age 94, left hemisphere 643.5
1977 Female, age 85, both hemispheres 603.0
1901 Male, age 80, both hemispheres 509.8
2042 Male, age 76, both hemispheres 464.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

758.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 758.1
Samples: 255

Max nTPM: 1769.9
Min nTPM: 157.9
Std nTPM: 286.7
Median nTPM: 751.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1769.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 1566.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1566.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1477.7
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 1474.3
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1435.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 1405.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1361.5
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1335.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1326.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1324.5
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1264.2
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 1254.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1228.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1228.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1226.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1223.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1213.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1175.8
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 1167.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1166.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1164.9
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 1163.6
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 1162.8
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 1136.1
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 1127.9
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 1127.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1126.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1121.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 1108.4
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 1081.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 1068.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1064.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1061.9
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 1060.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1053.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1052.0
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 1049.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1035.5
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 1030.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1030.1
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 1029.9
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 1023.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1021.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1007.7
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 1000.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 996.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 996.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 992.8
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 983.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 975.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 973.6
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 972.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 970.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 957.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 954.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 947.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 941.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 938.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 933.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 931.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 930.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 929.8
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 926.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 918.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 917.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 917.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 912.2
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 911.9
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 897.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 892.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 887.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 887.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 881.9
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 881.8
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 881.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 880.2
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 876.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 874.9
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 874.6
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 873.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 873.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 866.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 864.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 864.0
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 863.4
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 862.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 856.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 852.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 851.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 850.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 850.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 849.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 848.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 845.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 844.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 843.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 840.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 834.2
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 824.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 819.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 819.5
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 817.0
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 816.1
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 813.0
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 803.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 802.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 801.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 801.8
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 800.2
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 796.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 795.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 793.2
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 793.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 790.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 787.0
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 782.7
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 779.9
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 779.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 778.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 776.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 772.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 771.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 757.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 756.0
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 755.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 754.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 751.5
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 751.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 746.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 744.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 740.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 738.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 736.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 735.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 729.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 728.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 726.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 713.0
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 712.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 710.9
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 709.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 706.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 704.4
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 702.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 700.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 699.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 698.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 697.9
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 695.6
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 689.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 689.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 686.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 686.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 684.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 682.8
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 682.7
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 682.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 680.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 680.5
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 678.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 672.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 671.1
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 665.5
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 664.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 663.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 659.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 654.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 650.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 647.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 634.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 627.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 624.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 623.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 622.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 615.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 613.9
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 613.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 612.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 609.4
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 590.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 585.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 579.6
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 577.6
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 573.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 573.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 568.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 565.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 558.8
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 555.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 549.8
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 548.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 545.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 537.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 526.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 523.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 519.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 516.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 513.2
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 512.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 511.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 509.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 503.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 495.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 492.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 491.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 486.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 474.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 473.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 472.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 472.8
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 461.5
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 461.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 453.0
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 449.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 449.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 444.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 436.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 432.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 432.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 426.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 425.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 423.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 418.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 417.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 413.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 407.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 403.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 394.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 393.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 387.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 382.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 364.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 361.3
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 360.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 349.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 339.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 337.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 335.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 333.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 326.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 326.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 325.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 313.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 308.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 302.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 300.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 271.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 270.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 244.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 227.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 210.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 204.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 172.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 157.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

465.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 465.6
FF:10169-103B7 60 years, female 508.9
FF:10153-102I9 76 years, female 422.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1123.7
Pig sample Sample description nTPM
Subiculum
nTPM: 1064.8
Samples: 4

Max nTPM: 1222.0
Min nTPM: 873.7
Sample A Female 1222.0
Sample B Female 1082.1
Sample C Male 1081.3
Sample D Male 873.7
Dorsal hippocampus
nTPM: 1037.8
Samples: 4

Max nTPM: 1282.8
Min nTPM: 878.6
Sample A Female 1282.8
Sample B Female 1046.6
Sample C Male 943.1
Sample D Male 878.6
Entorhinal cortex
nTPM: 1031.5
Samples: 4

Max nTPM: 1184.7
Min nTPM: 866.1
Sample A Female 1004.4
Sample B Female 1184.7
Sample C Male 1070.7
Sample D Male 866.1
Ventral hippocampus
nTPM: 1123.7
Samples: 4

Max nTPM: 1497.1
Min nTPM: 886.0
Sample A Female 1118.1
Sample B Female 886.0
Sample C Male 1497.1
Sample D Male 993.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1114.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1114.2
Samples: 4

Max nTPM: 1285.4
Min nTPM: 950.3
Sample A Male 1128.0
Sample B Male 950.3
Sample C Female 1285.4
Sample D Female 1093.1
Hippocampal formation
nTPM: 1014.3
Samples: 4

Max nTPM: 1174.4
Min nTPM: 882.8
Sample A Male 1174.4
Sample B Male 882.8
Sample C Female 898.7
Sample D Female 1101.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.6
79556636 Antisense, RP_071204_01_A02, Mouse strain C57BL/6J (56 days, male) 11.1
275696 Antisense, RP_040617_01_C08, Mouse strain C57BL/6J (56 days, male) 9.7
73512352 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 2.0
71022960 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 0.8

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