MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:805.7 nTPM
HPA Brain:860.0 nTPM
GTEx:805.7 nTPM
FANTOM5:217.3 Scaled Tags Per Million
Pig:1540.4 nTPM
Mouse:1315.3 nTPM
Allen mouse:10.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 860.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 710.9
2019 Male, age 18, unknown 875.3
2586 Male, age 75, left hemisphere 855.2
1827 Male, age 72, unknown 823.7
2411 Female, age 72, unknown 802.2
2828 Female, age 72, unknown 735.3
2219 Male, age 76, both hemispheres 672.8
1833 Male, age 53, unknown 647.8
1870 Female, age 42, unknown 612.2
1830 Male, age 51, unknown 587.9
2666 Male, age 74, left hemisphere 496.1
Dorsal raphe nucleus
nTPM: 824.3
2298 Female, age 72, unknown 948.0
2047 Male, age 72, unknown 920.2
1828 Male, age 53, unknown 830.6
2750 Male, age 76, both hemispheres 727.9
2016 Female, age 72, unknown 695.0
Inferior colliculus
nTPM: 860.0
2097 Female, age 72, unknown 965.1
1848 Female, age 42, unknown 909.9
2849 Male, age 72, unknown 814.1
1890 Male, age 53, unknown 751.0
Median raphe nucleus
nTPM: 740.0
2220 Male, age 76, midline 740.0
Periaquaductal grey, anterior
nTPM: 627.9
2502 Female, age 75, unknown 663.4
1795 Male, age 51, unknown 636.5
1947 Male, age 18, unknown 583.9
Periaquaductal grey, dorsal
nTPM: 674.9
2464 Female, age 72, unknown 847.9
1840 Male, age 53, unknown 705.9
2850 Male, age 76, both hemispheres 621.8
1831 Male, age 72, unknown 524.0
Periaquaductal grey, lateral
nTPM: 568.0
2140 Male, age 76, both hemispheres 628.6
2053 Male, age 18, unknown 583.9
2272 Male, age 74, both hemispheres 491.4
Pretectal area
nTPM: 795.9
2007 Male, age 72, unknown 1149.1
1817 Female, age 42, unknown 1106.8
1944 Female, age 72, unknown 998.5
1816 Male, age 51, unknown 938.0
2667 Female, age 75, unknown 835.7
1815 Male, age 53, unknown 767.1
2224 Female, age 72, unknown 738.0
2825 Male, age 18, unknown 651.2
2316 Male, age 76, right hemisphere 614.2
2273 Male, age 74, both hemispheres 550.5
2407 Male, age 75, both hemispheres 406.2
Red nucleus
nTPM: 731.4
1821 Female, age 72, unknown 945.7
1954 Female, age 42, unknown 816.1
2588 Male, age 74, left hemisphere 805.1
2503 Female, age 72, unknown 795.6
2785 Male, age 18, unknown 789.9
2823 Male, age 76, right hemisphere 750.0
2227 Male, age 72, unknown 735.8
2769 Male, age 72, unknown 729.8
2725 Female, age 75, unknown 707.3
1865 Male, age 51, unknown 681.5
1904 Male, age 53, unknown 582.7
2584 Male, age 75, left hemisphere 437.7
Substantia nigra
nTPM: 718.4
1941 Male, age 53, unknown 1129.3
1889 Female, age 72, unknown 952.2
2665 Male, age 74, both hemispheres 844.8
1916 Female, age 42, unknown 735.4
1851 Male, age 51, unknown 640.2
2241 Male, age 72, unknown 631.5
2590 Female, age 75, unknown 607.2
2583 Male, age 75, right hemisphere 563.4
2699 Male, age 18, unknown 557.8
2409 Female, age 72, unknown 522.2
Superior colliculus
nTPM: 654.0
2087 Female, age 72, unknown 870.1
1895 Male, age 76, right hemisphere 792.5
1839 Male, age 51, unknown 723.8
2261 Male, age 18, unknown 711.2
1796 Male, age 53, unknown 686.1
2668 Female, age 75, unknown 646.4
2587 Male, age 74, left hemisphere 590.6
2664 Male, age 75, both hemispheres 568.3
1913 Female, age 42, unknown 494.7
1995 Male, age 72, unknown 456.8
Ventral tegmental area
nTPM: 643.8
2410 Female, age 72, unknown 777.8
2218 Male, age 76, both hemispheres 694.0
1915 Female, age 42, unknown 646.6
1942 Male, age 51, unknown 621.0
2223 Female, age 72, unknown 606.6
2021 Male, age 53, unknown 517.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 805.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 805.7
Samples: 183

Max nTPM: 2223.1
Min nTPM: 142.0
Std nTPM: 354.6
Median nTPM: 747.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2223.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2158.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2147.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1674.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1640.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1580.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1574.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1566.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1488.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1453.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1414.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 217.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 217.3
FF:10158-103A5 76 years, female 217.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1540.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1323.5
Samples: 4

Max nTPM: 1588.5
Min nTPM: 1023.2
Sample A Female 1588.5
Sample B Female 1023.2
Sample C Male 1526.4
Sample D Male 1155.8
Midbrain
nTPM: 1540.4
Samples: 4

Max nTPM: 1902.6
Min nTPM: 1238.3
Sample A Female 1902.6
Sample B Female 1238.3
Sample C Male 1669.8
Sample D Male 1350.8
Periaqueductal gray
nTPM: 1304.7
Samples: 3

Max nTPM: 1523.5
Min nTPM: 1150.6
Sample B Female 1240.1
Sample C Male 1523.5
Sample D Male 1150.6
Superior colliculi
nTPM: 1383.6
Samples: 4

Max nTPM: 1746.7
Min nTPM: 710.4
Sample A Female 1528.3
Sample B Female 710.4
Sample C Male 1746.7
Sample D Male 1549.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1315.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 1315.3
Samples: 4

Max nTPM: 1439.5
Min nTPM: 1226.2
Sample A Male 1439.5
Sample B Male 1245.8
Sample C Female 1226.2
Sample D Female 1349.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
79556636 Antisense, RP_071204_01_A02, Mouse strain C57BL/6J (56 days, male) 13.9
275696 Antisense, RP_040617_01_C08, Mouse strain C57BL/6J (56 days, male) 13.0
73512352 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 4.5
71022960 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 3.9

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