MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.2 nTPM
HPA Brain:170.9 nTPM
GTEx:97.2 nTPM
FANTOM5:287.0 Scaled Tags Per Million
Pig:122.7 nTPM
Mouse:206.3 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 170.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 144.6
2019 Male, age 18, unknown 166.8
1870 Female, age 42, unknown 155.1
1833 Male, age 53, unknown 153.2
1827 Male, age 72, unknown 149.6
1830 Male, age 51, unknown 149.0
2411 Female, age 72, unknown 143.7
2666 Male, age 74, left hemisphere 143.5
2828 Female, age 72, unknown 136.3
2219 Male, age 76, both hemispheres 125.4
2586 Male, age 75, left hemisphere 123.2
Dorsal raphe nucleus
nTPM: 152.6
2298 Female, age 72, unknown 157.2
1828 Male, age 53, unknown 154.3
2750 Male, age 76, both hemispheres 154.0
2047 Male, age 72, unknown 150.4
2016 Female, age 72, unknown 146.9
Inferior colliculus
nTPM: 153.7
2097 Female, age 72, unknown 161.9
2849 Male, age 72, unknown 152.4
1890 Male, age 53, unknown 150.6
1848 Female, age 42, unknown 149.8
Median raphe nucleus
nTPM: 170.9
2220 Male, age 76, midline 170.9
Periaquaductal grey, anterior
nTPM: 143.4
2502 Female, age 75, unknown 149.1
1947 Male, age 18, unknown 145.4
1795 Male, age 51, unknown 135.7
Periaquaductal grey, dorsal
nTPM: 154.2
2850 Male, age 76, both hemispheres 185.4
1831 Male, age 72, unknown 152.4
1840 Male, age 53, unknown 140.1
2464 Female, age 72, unknown 138.9
Periaquaductal grey, lateral
nTPM: 159.0
2272 Male, age 74, both hemispheres 171.0
2140 Male, age 76, both hemispheres 163.6
2053 Male, age 18, unknown 142.3
Pretectal area
nTPM: 164.6
1817 Female, age 42, unknown 193.0
2007 Male, age 72, unknown 181.1
1944 Female, age 72, unknown 180.3
1816 Male, age 51, unknown 178.2
2273 Male, age 74, both hemispheres 169.9
1815 Male, age 53, unknown 168.8
2667 Female, age 75, unknown 161.1
2224 Female, age 72, unknown 159.1
2407 Male, age 75, both hemispheres 143.4
2825 Male, age 18, unknown 138.6
2316 Male, age 76, right hemisphere 136.9
Red nucleus
nTPM: 151.8
1821 Female, age 72, unknown 173.8
2785 Male, age 18, unknown 166.7
1904 Male, age 53, unknown 157.2
1865 Male, age 51, unknown 154.5
1954 Female, age 42, unknown 154.5
2725 Female, age 75, unknown 153.4
2823 Male, age 76, right hemisphere 152.7
2503 Female, age 72, unknown 152.6
2584 Male, age 75, left hemisphere 151.1
2227 Male, age 72, unknown 141.3
2769 Male, age 72, unknown 138.0
2588 Male, age 74, left hemisphere 125.3
Substantia nigra
nTPM: 167.0
1889 Female, age 72, unknown 183.5
2241 Male, age 72, unknown 181.3
1916 Female, age 42, unknown 180.9
1941 Male, age 53, unknown 179.3
1851 Male, age 51, unknown 174.5
2409 Female, age 72, unknown 166.2
2699 Male, age 18, unknown 163.3
2665 Male, age 74, both hemispheres 150.0
2590 Female, age 75, unknown 149.1
2583 Male, age 75, right hemisphere 142.2
Superior colliculus
nTPM: 149.5
2087 Female, age 72, unknown 169.6
2668 Female, age 75, unknown 160.1
2587 Male, age 74, left hemisphere 157.7
1913 Female, age 42, unknown 157.2
2261 Male, age 18, unknown 154.1
1796 Male, age 53, unknown 146.2
1995 Male, age 72, unknown 143.3
1839 Male, age 51, unknown 140.7
1895 Male, age 76, right hemisphere 137.8
2664 Male, age 75, both hemispheres 128.7
Ventral tegmental area
nTPM: 152.1
2218 Male, age 76, both hemispheres 173.4
2223 Female, age 72, unknown 159.0
2410 Female, age 72, unknown 151.8
1915 Female, age 42, unknown 149.4
1942 Male, age 51, unknown 140.6
2021 Male, age 53, unknown 138.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 97.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.2
Samples: 183

Max nTPM: 188.7
Min nTPM: 66.2
Std nTPM: 19.5
Median nTPM: 92.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 188.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 173.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 161.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 144.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 144.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 139.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 139.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 138.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 136.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 133.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 132.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 287.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 287.0
FF:10158-103A5 76 years, female 287.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 122.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 113.1
Samples: 4

Max nTPM: 132.8
Min nTPM: 93.8
Sample A Female 132.8
Sample B Female 108.1
Sample C Male 117.7
Sample D Male 93.8
Midbrain
nTPM: 122.3
Samples: 4

Max nTPM: 127.6
Min nTPM: 114.7
Sample A Female 127.2
Sample B Female 119.8
Sample C Male 127.6
Sample D Male 114.7
Periaqueductal gray
nTPM: 108.4
Samples: 3

Max nTPM: 115.3
Min nTPM: 103.4
Sample B Female 103.4
Sample C Male 115.3
Sample D Male 106.4
Superior colliculi
nTPM: 122.7
Samples: 4

Max nTPM: 134.8
Min nTPM: 110.7
Sample A Female 131.6
Sample B Female 110.7
Sample C Male 134.8
Sample D Male 113.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 206.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 206.4
Samples: 4

Max nTPM: 213.7
Min nTPM: 199.9
Sample A Male 205.3
Sample B Male 213.7
Sample C Female 206.5
Sample D Female 199.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69015386 Antisense, RP_050310_02_H04, Mouse strain C57BL/6J (56 days, male) 1.5

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