MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.9 nTPM
HPA Brain:180.1 nTPM
GTEx:46.9 nTPM
FANTOM5:125.8 Scaled Tags Per Million
Pig:112.3 nTPM
Mouse:120.3 nTPM
Allen mouse:5.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 180.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.1
2019 Male, age 18, unknown 173.2
1827 Male, age 72, unknown 166.6
2586 Male, age 75, left hemisphere 143.6
2828 Female, age 72, unknown 141.7
2666 Male, age 74, left hemisphere 131.7
2411 Female, age 72, unknown 130.7
1830 Male, age 51, unknown 125.8
2219 Male, age 76, both hemispheres 125.3
1833 Male, age 53, unknown 121.7
1870 Female, age 42, unknown 120.2
Dorsal raphe nucleus
nTPM: 149.0
2298 Female, age 72, unknown 175.5
2047 Male, age 72, unknown 149.3
2016 Female, age 72, unknown 149.0
1828 Male, age 53, unknown 145.6
2750 Male, age 76, both hemispheres 125.6
Inferior colliculus
nTPM: 147.1
2097 Female, age 72, unknown 159.5
1890 Male, age 53, unknown 152.0
1848 Female, age 42, unknown 142.0
2849 Male, age 72, unknown 134.8
Median raphe nucleus
nTPM: 136.1
2220 Male, age 76, midline 136.1
Periaquaductal grey, anterior
nTPM: 149.0
1795 Male, age 51, unknown 157.1
1947 Male, age 18, unknown 155.2
2502 Female, age 75, unknown 134.7
Periaquaductal grey, dorsal
nTPM: 143.1
2850 Male, age 76, both hemispheres 147.6
2464 Female, age 72, unknown 144.8
1840 Male, age 53, unknown 140.9
1831 Male, age 72, unknown 138.9
Periaquaductal grey, lateral
nTPM: 155.1
2272 Male, age 74, both hemispheres 190.5
2053 Male, age 18, unknown 139.7
2140 Male, age 76, both hemispheres 135.2
Pretectal area
nTPM: 180.1
1816 Male, age 51, unknown 228.7
1944 Female, age 72, unknown 214.0
2273 Male, age 74, both hemispheres 205.6
2667 Female, age 75, unknown 204.8
2007 Male, age 72, unknown 203.2
1817 Female, age 42, unknown 195.9
1815 Male, age 53, unknown 174.1
2224 Female, age 72, unknown 153.2
2407 Male, age 75, both hemispheres 152.5
2825 Male, age 18, unknown 126.6
2316 Male, age 76, right hemisphere 122.2
Red nucleus
nTPM: 138.6
1821 Female, age 72, unknown 166.2
2725 Female, age 75, unknown 165.9
2785 Male, age 18, unknown 151.3
2588 Male, age 74, left hemisphere 146.1
2584 Male, age 75, left hemisphere 142.3
1954 Female, age 42, unknown 134.5
2823 Male, age 76, right hemisphere 132.4
1865 Male, age 51, unknown 128.6
2503 Female, age 72, unknown 128.2
1904 Male, age 53, unknown 124.9
2769 Male, age 72, unknown 122.4
2227 Male, age 72, unknown 120.0
Substantia nigra
nTPM: 168.5
1941 Male, age 53, unknown 203.2
1916 Female, age 42, unknown 195.5
2241 Male, age 72, unknown 191.3
1889 Female, age 72, unknown 176.3
1851 Male, age 51, unknown 170.3
2699 Male, age 18, unknown 156.8
2665 Male, age 74, both hemispheres 153.8
2409 Female, age 72, unknown 151.4
2590 Female, age 75, unknown 144.0
2583 Male, age 75, right hemisphere 142.1
Superior colliculus
nTPM: 146.1
2087 Female, age 72, unknown 171.4
1796 Male, age 53, unknown 166.4
2261 Male, age 18, unknown 163.3
2664 Male, age 75, both hemispheres 162.5
2587 Male, age 74, left hemisphere 143.8
2668 Female, age 75, unknown 133.0
1913 Female, age 42, unknown 131.3
1995 Male, age 72, unknown 130.2
1895 Male, age 76, right hemisphere 129.6
1839 Male, age 51, unknown 129.2
Ventral tegmental area
nTPM: 143.0
1915 Female, age 42, unknown 153.6
2410 Female, age 72, unknown 150.7
2223 Female, age 72, unknown 147.4
2218 Male, age 76, both hemispheres 143.8
1942 Male, age 51, unknown 133.9
2021 Male, age 53, unknown 128.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 183

Max nTPM: 87.6
Min nTPM: 11.9
Std nTPM: 15.0
Median nTPM: 46.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 87.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 87.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 86.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 77.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 76.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 76.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 74.6
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 74.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 73.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 73.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.8
FF:10158-103A5 76 years, female 125.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 112.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.8
Samples: 4

Max nTPM: 128.8
Min nTPM: 49.8
Sample A Female 128.8
Sample B Female 64.4
Sample C Male 100.3
Sample D Male 49.8
Midbrain
nTPM: 107.2
Samples: 4

Max nTPM: 125.2
Min nTPM: 73.2
Sample A Female 106.7
Sample B Female 73.2
Sample C Male 125.2
Sample D Male 123.5
Periaqueductal gray
nTPM: 71.1
Samples: 3

Max nTPM: 82.6
Min nTPM: 62.0
Sample B Female 68.7
Sample C Male 82.6
Sample D Male 62.0
Superior colliculi
nTPM: 112.3
Samples: 4

Max nTPM: 143.2
Min nTPM: 68.3
Sample A Female 134.9
Sample B Female 68.3
Sample C Male 143.2
Sample D Male 102.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 120.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 120.3
Samples: 4

Max nTPM: 129.3
Min nTPM: 109.7
Sample A Male 109.7
Sample B Male 122.1
Sample C Female 129.3
Sample D Female 119.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70946134 Antisense, RP_050303_02_G06, Mouse strain C57BL/6J (56 days, male) 10.7
70795415 Antisense, RP_050712_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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