MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA Brain:65.5 nTPM
GTEx:39.0 nTPM
FANTOM5:84.7 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:62.3 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 65.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2586 Male, age 75, left hemisphere 83.8
1833 Male, age 53, unknown 65.6
1830 Male, age 51, unknown 62.5
1870 Female, age 42, unknown 61.5
2666 Male, age 74, left hemisphere 60.9
2411 Female, age 72, unknown 60.3
2019 Male, age 18, unknown 55.3
1827 Male, age 72, unknown 53.5
2828 Female, age 72, unknown 47.7
2219 Male, age 76, both hemispheres 38.8
Dorsal raphe nucleus
nTPM: 45.9
2750 Male, age 76, both hemispheres 50.7
2016 Female, age 72, unknown 49.1
2047 Male, age 72, unknown 46.8
1828 Male, age 53, unknown 46.1
2298 Female, age 72, unknown 36.7
Inferior colliculus
nTPM: 55.0
1890 Male, age 53, unknown 57.6
2849 Male, age 72, unknown 56.9
1848 Female, age 42, unknown 55.5
2097 Female, age 72, unknown 50.0
Median raphe nucleus
nTPM: 39.3
2220 Male, age 76, midline 39.3
Periaquaductal grey, anterior
nTPM: 47.3
2502 Female, age 75, unknown 52.5
1947 Male, age 18, unknown 46.6
1795 Male, age 51, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 47.2
2464 Female, age 72, unknown 53.1
1840 Male, age 53, unknown 51.6
1831 Male, age 72, unknown 45.2
2850 Male, age 76, both hemispheres 38.7
Periaquaductal grey, lateral
nTPM: 45.3
2053 Male, age 18, unknown 53.6
2140 Male, age 76, both hemispheres 41.2
2272 Male, age 74, both hemispheres 41.0
Pretectal area
nTPM: 47.2
2407 Male, age 75, both hemispheres 62.4
1815 Male, age 53, unknown 53.7
2825 Male, age 18, unknown 51.1
1816 Male, age 51, unknown 48.8
2007 Male, age 72, unknown 46.4
1817 Female, age 42, unknown 45.9
2316 Male, age 76, right hemisphere 44.5
2667 Female, age 75, unknown 43.7
1944 Female, age 72, unknown 42.5
2224 Female, age 72, unknown 42.3
2273 Male, age 74, both hemispheres 37.6
Red nucleus
nTPM: 61.2
2584 Male, age 75, left hemisphere 75.1
2588 Male, age 74, left hemisphere 67.9
1904 Male, age 53, unknown 67.7
1821 Female, age 72, unknown 66.5
1865 Male, age 51, unknown 65.9
2503 Female, age 72, unknown 65.7
2227 Male, age 72, unknown 60.3
2769 Male, age 72, unknown 57.5
1954 Female, age 42, unknown 56.5
2725 Female, age 75, unknown 53.2
2785 Male, age 18, unknown 51.0
2823 Male, age 76, right hemisphere 47.2
Substantia nigra
nTPM: 65.5
2409 Female, age 72, unknown 84.5
2665 Male, age 74, both hemispheres 80.3
2699 Male, age 18, unknown 74.5
2583 Male, age 75, right hemisphere 70.6
1851 Male, age 51, unknown 69.0
2590 Female, age 75, unknown 65.6
2241 Male, age 72, unknown 58.9
1916 Female, age 42, unknown 58.0
1889 Female, age 72, unknown 54.0
1941 Male, age 53, unknown 39.3
Superior colliculus
nTPM: 55.6
1995 Male, age 72, unknown 67.7
1913 Female, age 42, unknown 64.5
2587 Male, age 74, left hemisphere 62.5
2664 Male, age 75, both hemispheres 59.4
2668 Female, age 75, unknown 59.2
1796 Male, age 53, unknown 53.4
1839 Male, age 51, unknown 50.1
2087 Female, age 72, unknown 47.8
1895 Male, age 76, right hemisphere 46.1
2261 Male, age 18, unknown 45.9
Ventral tegmental area
nTPM: 55.4
2223 Female, age 72, unknown 67.5
1915 Female, age 42, unknown 59.8
2410 Female, age 72, unknown 57.5
2021 Male, age 53, unknown 54.5
1942 Male, age 51, unknown 50.5
2218 Male, age 76, both hemispheres 42.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.0
Samples: 183

Max nTPM: 122.1
Min nTPM: 11.5
Std nTPM: 16.9
Median nTPM: 35.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 122.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 89.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 81.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 80.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 77.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 77.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 69.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 67.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 63.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.7
FF:10158-103A5 76 years, female 84.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.5
Samples: 4

Max nTPM: 26.9
Min nTPM: 22.0
Sample A Female 24.4
Sample B Female 22.0
Sample C Male 24.5
Sample D Male 26.9
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 31.2
Min nTPM: 22.7
Sample A Female 31.2
Sample B Female 25.3
Sample C Male 23.9
Sample D Male 22.7
Periaqueductal gray
nTPM: 21.4
Samples: 3

Max nTPM: 21.8
Min nTPM: 20.8
Sample B Female 21.6
Sample C Male 20.8
Sample D Male 21.8
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 22.7
Min nTPM: 19.9
Sample A Female 21.9
Sample B Female 19.9
Sample C Male 21.4
Sample D Male 22.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 67.3
Min nTPM: 57.7
Sample A Male 57.7
Sample B Male 58.0
Sample C Female 67.3
Sample D Female 66.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
73584837 Antisense, RP_051206_01_C05, Mouse strain C57BL/6J (56 days, male) 3.1

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