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  • TISSUE

  • BRAIN

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:167.3 nTPM
HPA Brain:542.1 nTPM
GTEx:167.3 nTPM
FANTOM5:643.1 Scaled Tags Per Million
Pig:397.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

542.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 486.6
1981 Female, age 72, midline 627.0
2048 Male, age 55, midline 613.7
2194 Female, age 79, both hemispheres 400.4
2816 Male, age 47, midline 397.5
2565 Male, age 75, midline 394.6
Cervical spinal cord, dorsal horn
nTPM: 542.1
2721 Male, age 90, both hemispheres 689.6
2173 Female, age 72, unknown 601.1
2069 Male, age 47, both hemispheres 561.1
1877 Male, age 55, unknown 495.0
2296 Male, age 66, both hemispheres 480.9
2297 Male, age 75, both hemispheres 424.6
Cervical spinal cord, ventral horn
nTPM: 410.1
2098 Female, age 72, unknown 641.1
2295 Male, age 66, both hemispheres 462.5
2068 Male, age 55, unknown 408.4
2809 Male, age 90, both hemispheres 401.4
2820 Female, age 79, both hemispheres 274.3
2480 Male, age 75, both hemispheres 273.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 167.3
Samples: 204

Max nTPM: 634.0
Min nTPM: 48.3
Std nTPM: 82.4
Median nTPM: 144.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 634.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 462.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 416.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 384.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 383.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 363.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 359.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 354.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 351.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 334.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 327.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 323.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 318.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 316.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 296.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 293.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 290.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 287.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 285.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 277.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 276.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 274.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 270.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 265.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 265.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 263.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 263.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 260.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 256.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 256.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 256.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 241.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 238.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 233.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 229.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 228.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 222.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 221.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 220.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 217.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 216.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 216.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 215.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 213.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 213.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 209.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 208.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 208.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 203.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 203.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 202.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 200.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 198.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 196.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 196.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 195.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 193.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 193.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 193.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 191.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 190.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 189.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 187.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 186.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 185.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 184.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 181.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 179.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 177.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 177.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 177.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 173.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 172.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 171.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 169.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 168.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 167.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 166.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 165.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 163.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 162.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 161.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 161.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 159.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 158.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 158.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 158.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 157.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 157.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 156.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 153.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 153.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 152.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 151.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 151.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 146.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 145.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 145.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 144.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 144.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 144.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 144.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 142.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 140.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 139.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 139.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 139.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 139.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 137.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 137.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 136.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 136.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 135.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 133.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 132.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 131.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 131.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 130.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 130.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 129.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 129.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 129.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 129.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 129.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 128.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 128.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 128.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 127.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 125.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 125.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 123.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 123.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 122.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 121.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 120.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 120.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 119.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 118.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 118.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 117.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 117.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 117.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 117.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 116.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 116.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 115.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 113.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 113.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 113.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 112.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 111.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 111.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 110.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 109.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 109.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 108.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 108.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 108.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 107.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 104.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 103.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 103.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 103.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 103.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 102.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 102.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 100.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 99.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 99.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 97.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 96.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 96.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 95.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 95.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 94.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 93.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 91.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 91.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 90.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 90.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 89.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 87.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 86.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 86.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 85.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 83.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 81.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 80.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 79.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 77.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 76.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 76.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 76.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 74.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 74.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 70.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 68.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 64.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 63.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 48.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

643.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 643.1
FF:10159-103A6 76 years, female 780.9
FF:10181-103D1 60 years, female 505.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 300.8
Samples: 4

Max nTPM: 364.8
Min nTPM: 182.0
Sample A Female 364.8
Sample B Female 330.5
Sample C Male 182.0
Sample D Male 325.7
Ventral spinal cord
nTPM: 397.3
Samples: 4

Max nTPM: 456.4
Min nTPM: 352.5
Sample A Female 421.8
Sample B Female 456.4
Sample C Male 358.3
Sample D Male 352.5

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