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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:940.4 nTPM
HPA Brain:767.3 nTPM
GTEx:940.4 nTPM
FANTOM5:1867.4 Scaled Tags Per Million
Pig:466.8 nTPM
Mouse:2832.4 nTPM
Allen mouse:26.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

767.3
Sample id Sample description nTPM
Amygdala
nTPM: 767.3
2514 Male, age 75, right hemisphere 1049.5
1987 Female, age 91, left hemisphere 915.3
2517 Female, age 94, left hemisphere 769.8
2814 Male, age 76, right hemisphere 612.9
2695 Female, age 67, right hemisphere 489.2
Basal amygdala
nTPM: 646.7
2609 Male, age 75, right hemisphere 1006.9
2243 Female, age 91, right hemisphere 804.1
2110 Male, age 80, left hemisphere 723.5
2685 Female, age 94, left hemisphere 634.4
1955 Male, age 76, both hemispheres 517.5
2827 Female, age 67, right hemisphere 193.9
Central amygdala
nTPM: 686.9
2515 Male, age 75, right hemisphere 796.2
2239 Male, age 80, left hemisphere 703.9
2701 Female, age 91, right hemisphere 688.3
2826 Female, age 94, left hemisphere 635.0
1905 Male, age 76, both hemispheres 611.0
Corticomedial amygdala
nTPM: 714.4
2829 Male, age 80, left hemisphere 937.7
2428 Male, age 75, right hemisphere 905.3
2242 Female, age 91, right hemisphere 891.9
2429 Female, age 94, left hemisphere 753.2
2240 Male, age 76, both hemispheres 492.2
2535 Female, age 67, right hemisphere 306.2
Lateral amygdala
nTPM: 551.4
2516 Male, age 75, right hemisphere 822.1
2255 Female, age 91, right hemisphere 659.6
1883 Male, age 76, both hemispheres 593.5
2534 Female, age 94, left hemisphere 551.8
2256 Male, age 80, left hemisphere 513.3
2830 Female, age 67, right hemisphere 168.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

940.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 940.4
Samples: 181

Max nTPM: 2510.6
Min nTPM: 157.1
Std nTPM: 451.6
Median nTPM: 874.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2510.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2310.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2098.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2069.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2021.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1972.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1844.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1823.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1798.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1765.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1734.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1716.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1706.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1632.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1582.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1557.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1543.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1512.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1495.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1493.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1467.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1446.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1435.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1426.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1425.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1419.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1409.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1366.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1365.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1355.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1353.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1336.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1332.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1332.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1327.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1323.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1322.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1322.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1319.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1319.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1313.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1304.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1300.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1288.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1285.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1263.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1255.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1244.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1240.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1235.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1198.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1188.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1161.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1161.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1151.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1148.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1139.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1137.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1116.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1096.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1093.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1077.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1073.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1072.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1068.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1068.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1067.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1062.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1057.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1022.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1012.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1001.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 996.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 986.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 986.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 985.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 981.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 974.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 970.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 961.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 948.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 941.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 929.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 928.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 927.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 896.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 894.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 879.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 877.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 876.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 874.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 866.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 859.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 825.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 823.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 820.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 816.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 805.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 803.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 787.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 781.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 778.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 777.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 760.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 759.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 756.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 750.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 749.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 748.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 747.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 746.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 741.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 739.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 725.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 723.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 718.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 714.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 689.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 689.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 682.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 682.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 681.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 680.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 668.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 660.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 659.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 656.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 652.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 651.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 650.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 649.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 638.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 631.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 630.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 617.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 617.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 587.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 584.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 572.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 564.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 564.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 562.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 561.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 550.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 545.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 542.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 540.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 539.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 534.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 528.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 522.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 520.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 516.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 510.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 508.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 502.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 493.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 491.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 453.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 440.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 430.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 429.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 417.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 417.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 401.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 387.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 357.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 352.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 344.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 323.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 312.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 307.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 291.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 276.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 271.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 251.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 237.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 212.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 197.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 168.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 157.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1867.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1867.4
FF:10151-102I7 76 years, female 1867.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.8
Pig sample Sample description nTPM
Amygdala
nTPM: 466.8
Samples: 4

Max nTPM: 546.6
Min nTPM: 427.2
Sample A Female 546.6
Sample B Female 427.2
Sample C Male 445.0
Sample D Male 448.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2832.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 2832.4
Samples: 4

Max nTPM: 3009.7
Min nTPM: 2609.3
Sample A Male 2609.3
Sample B Male 2758.1
Sample C Female 3009.7
Sample D Female 2952.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
1692 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 26.9
1691 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 20.4

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